METHOD about: | ../../../doc/explain_methods.html#PX_about_psipred |
METHOD url: | PSIpred |
TYPE : | sec |
NPROT : | 374 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for PSIpred in month 2003_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_12 | dssp | ALL_proteins:psum | 75.9 | 82 | 80 | 66 | 73 | 75 | 74 | 73.0 | 77.9 | 72.9 | 69.1 | 2.8 | 0.37 | 0.37 | 0.37 | 0.69 | 0.61 | 0.56 | 8529.4 | 7.0 | 5.7 |
sec | 2003_12 | dssp | ALL_proteins:sig | 12.1 | 32 | 32 | 39 | 43 | 14 | 13 | 17.3 | 24.8 | 29.0 | 18.3 | 4.6 | 0.17 | 0.17 | 0.18 | 0.25 | 0.29 | 0.19 | 8455.5 | 8.8 | 7.1 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.62 | 1 | 1 | 2 | 2 | 0.76 | 0.70 | 0.89 | 1.2 | 1.5 | 0.95 | 0.24 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 437.2 | 0.45 | 0.36 |
sec | 2003_12 | dssp | THIS_month:psum | 79.0 | 62 | 59 | 45 | 48 | 72 | 77 | 77.7 | 86.1 | 74.6 | 66.4 | 3.2 | 0.35 | 0.36 | 0.34 | 0.73 | 0.66 | 0.54 | 94.4 | 7.7 | 6.7 |
sec | 2003_12 | dssp | 1izm:A | 87.6 | 99 | 88 | 0 | 0 | 66 | 97 | 78.0 | 84 | 100 | 68 | 0.0 | 0.54 | 0.56 | 0.53 | 0.80 | 1.0 | 0.73 | 100.0 | 7.0 | 3.0 |
sec | 2003_12 | dssp | 1j0w:A | 80.8 | 100 | 70 | 72 | 91 | 81 | 77 | 87.9 | 94 | 86 | 86 | 3.0 | 0.49 | 0.50 | 0.48 | 0.80 | 0.69 | 0.66 | 100.0 | 7.0 | 9.0 |
sec | 2003_12 | dssp | 1j27:A | 84.7 | 100 | 83 | 73 | 96 | 81 | 72 | 81.4 | 100 | 70 | 78 | 4.0 | 0.58 | 0.59 | 0.58 | 0.86 | 0.75 | 0.69 | 100.0 | 7.0 | 10.0 |
sec | 2003_12 | dssp | 1ocs:A | 88.6 | 90 | 91 | 82 | 88 | 90 | 85 | 81.0 | 96 | 72 | 75 | 1.5 | 0.61 | 0.61 | 0.62 | 0.85 | 0.81 | 0.79 | 0.0 | 0.00 | 1.0 |
sec | 2003_12 | dssp | 1pc0:A | 85.2 | 0 | 0 | 90 | 87 | 79 | 88 | 97.0 | 100 | 100 | 93 | 0.0 | 0.45 | 0.49 | 0.42 | 1.0 | 0.76 | 0.70 | 100.0 | 3.0 | 1.0 |
sec | 2003_12 | dssp | 1pd3:A | 85.2 | 97 | 86 | 0 | 0 | 30 | 75 | 88.0 | 100 | 100 | 35 | 0.0 | 0.18 | 0.13 | 0.24 | 0.41 | 1.0 | 0.41 | 100.0 | 11.0 | 0.00 |
sec | 2003_12 | dssp | 1pg6:A | 82.1 | 0 | 0 | 84 | 80 | 80 | 84 | 91.6 | 100 | 96 | 87 | 0.0 | 0.32 | 0.32 | 0.32 | 1.0 | 0.64 | 0.64 | 100.0 | 0.00 | 2.0 |
sec | 2003_12 | dssp | 1q3j:A | 80.6 | 0 | 0 | 25 | 66 | 96 | 81 | 45.0 | 100 | 28 | 49 | 0.0 | 0.11 | 0.08 | 0.15 | 1.0 | 0.32 | 0.32 | 100.0 | 0.00 | 13.0 |
sec | 2003_12 | dssp | 1q7s:A | 84.6 | 92 | 100 | 66 | 92 | 92 | 60 | 88.7 | 94 | 80 | 87 | 0.0 | 0.64 | 0.65 | 0.64 | 0.93 | 0.71 | 0.65 | 100.0 | 3.0 | 8.0 |
sec | 2003_12 | dssp | 1q90:L | 81.2 | 96 | 82 | 0 | 0 | 28 | 66 | 82.8 | 100 | 100 | 21 | 0.0 | 0.12 | 0.09 | 0.16 | 0.34 | 1.0 | 0.34 | 100.0 | 12.0 | 0.00 |
sec | 2003_12 | dssp | 1q90:M | 88.2 | 93 | 93 | 0 | 0 | 33 | 33 | 92.2 | 100 | 100 | 11 | 0.0 | 0.08 | 0.08 | 0.08 | 0.26 | 1.0 | 0.26 | 100.0 | 0.00 | 0.00 |
sec | 2003_12 | dssp | 1q90:N | 51.6 | 40 | 100 | 0 | 0 | 100 | 66 | 67.7 | 60 | 100 | 100 | 38.7 | 0.45 | 0.62 | 0.28 | 0.33 | 1.0 | 0.76 | 100.0 | 48.0 | 38.0 |
sec | 2003_12 | dssp | 1r21:A | 80.0 | 0 | 0 | 82 | 76 | 77 | 84 | 91.9 | 100 | 90 | 92 | 0.0 | 0.28 | 0.28 | 0.28 | 1.0 | 0.60 | 0.60 | 100.0 | 0.00 | 3.0 |
sec | 2003_12 | dssp | 1rf8:B | 70.0 | 53 | 68 | 0 | 0 | 79 | 84 | 63.1 | 53 | 0 | 67 | 6.0 | 0.16 | 0.19 | 0.15 | 0.44 | -0.03 | 0.47 | 100.0 | 7.0 | 11.0 |
sec | 2003_12 | dssp | 1rji:A | 64.5 | 0 | 0 | 0 | 0 | 86 | 74 | 33.3 | 0 | 0 | 44 | 3.2 | 0.04 | 0.03 | 0.06 | 1.0 | -0.14 | -0.00 | 100.0 | 12.0 | 0.00 |
sec | 2003_12 | dssp | 1roc:A | 83.2 | 60 | 90 | 85 | 87 | 86 | 77 | 88.8 | 69 | 97 | 83 | 0.6 | 0.45 | 0.44 | 0.47 | 0.71 | 0.74 | 0.67 | 100.0 | 3.0 | 1.0 |
sec | 2003_12 | dssp | 1rws:A | 55.9 | 100 | 33 | 62 | 23 | 50 | 93 | 54.3 | 100 | 33 | 52 | 1.4 | 0.18 | 0.24 | 0.14 | 0.51 | 0.24 | 0.29 | 100.0 | 17.0 | 19.0 |
sec | 2003_12 | dssp | 1usm:A | 88.3 | 100 | 90 | 90 | 82 | 73 | 90 | 87.0 | 100 | 91 | 68 | 0.0 | 0.67 | 0.67 | 0.68 | 0.92 | 0.81 | 0.73 | 100.0 | 3.0 | 2.0 |
sec | 2003_12 | dssp | THIS_month:psum | 79.0 | 62 | 59 | 45 | 48 | 72 | 77 | 77.7 | 86.1 | 74.6 | 66.4 | 3.2 | 0.35 | 0.36 | 0.34 | 0.73 | 0.66 | 0.54 | 94.4 | 7.7 | 6.7 |
sec | 2003_12 | dssp | ALL_proteins:psum | 75.9 | 82 | 80 | 66 | 73 | 75 | 74 | 73.0 | 77.9 | 72.9 | 69.1 | 2.8 | 0.37 | 0.37 | 0.37 | 0.69 | 0.61 | 0.56 | 8529.4 | 7.0 | 5.7 |
sec | 2003_12 | dssp | ALL_proteins:sig | 12.1 | 32 | 32 | 39 | 43 | 14 | 13 | 17.3 | 24.8 | 29.0 | 18.3 | 4.6 | 0.17 | 0.17 | 0.18 | 0.25 | 0.29 | 0.19 | 8455.5 | 8.8 | 7.1 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.62 | 1 | 1 | 2 | 2 | 0.76 | 0.70 | 0.89 | 1.2 | 1.5 | 0.95 | 0.24 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 437.2 | 0.45 | 0.36 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |