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EVA sec results for: PROFsec month: 2003_12

METHOD about:	../../../doc/explain_methods.html#PX_about_profsec
METHOD url:	PROFsec
TYPE :	sec
NPROT :	373
NWEEKS :	78
NOTE 1 :	here ALL results obtained for PROFsec in month 2003_12 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2003_12 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2003_12	dssp	ALL_proteins:psum	75.0	77	82	70	68	75	73	72.2	71.2	75.7	67.8	3.0	0.35	0.35	0.35	0.68	0.60	0.55	8391.4	7.4	6.4
sec	2003_12	dssp	ALL_proteins:sig	11.5	37	38	42	40	15	13	16.0	31.4	26.5	17.0	5.3	0.17	0.17	0.17	0.28	0.28	0.19	8318.7	8.1	8.0
sec	2003_12	dssp	ALL_proteins:errsig	0.60	1	1	2	2	0.79	0.71	0.83	1.6	1.3	0.88	0.27	0.00	0.00	0.00	0.01	0.01	0.01	430.7	0.42	0.41
sec	2003_12	dssp	THIS_month:psum	75.2	56	56	45	45	68	74	76.2	82.4	71.9	67.1	4.5	0.34	0.35	0.32	0.69	0.63	0.50	88.8	8.2	10.8

sec	2003_12	dssp	1izm:A	87.1	91	91	0	0	78	83	87.5	97	100	73	0.0	0.46	0.49	0.44	0.76	1.0	0.71	100.0	0.00	2.0
sec	2003_12	dssp	1j0w:A	84.8	100	70	77	97	86	82	87.9	94	86	86	3.0	0.57	0.58	0.56	0.80	0.78	0.74	100.0	7.0	9.0
sec	2003_12	dssp	1j27:A	74.5	97	64	58	96	68	75	81.8	100	68	78	13.2	0.39	0.38	0.41	0.64	0.64	0.63	100.0	18.0	16.0
sec	2003_12	dssp	1ocs:A	87.9	82	97	85	92	94	79	86.7	88	72	95	0.0	0.63	0.63	0.64	0.84	0.86	0.76	0.0	6.0	1.0
sec	2003_12	dssp	1pc0:A	88.5	0	0	100	82	75	100	96.7	100	100	93	0.0	0.58	0.56	0.60	1.0	0.78	0.78	100.0	0.00	11.0
sec	2003_12	dssp	1pd3:A	83.3	90	88	0	0	50	55	74.2	75	100	63	0.0	0.15	0.15	0.16	0.42	1.0	0.42	100.0	1.0	0.00
sec	2003_12	dssp	1pg6:A	76.9	0	0	89	70	65	86	80.0	100	90	70	0.0	0.25	0.24	0.26	1.0	0.55	0.55	100.0	0.00	12.0
sec	2003_12	dssp	1q3j:A	77.8	0	0	75	50	78	91	81.2	100	52	89	0.0	0.18	0.20	0.17	1.0	0.47	0.47	100.0	0.00	11.0
sec	2003_12	dssp	1q7s:A	84.6	89	100	66	100	100	59	87.5	94	80	82	0.0	0.66	0.66	0.66	0.90	0.76	0.68	0.0	5.0	10.0
sec	2003_12	dssp	1q90:L	81.2	96	82	0	0	28	66	82.8	100	100	21	0.0	0.12	0.09	0.16	0.34	1.0	0.34	100.0	12.0	0.00
sec	2003_12	dssp	1q90:M	76.5	80	100	0	0	33	25	94.1	100	100	33	8.8	0.31	0.45	0.17	0.51	1.0	0.20	100.0	17.0	14.0
sec	2003_12	dssp	1q90:N	58.1	52	92	0	0	83	71	79.5	76	100	90	32.2	0.35	0.49	0.23	0.28	1.0	0.71	100.0	35.0	32.0
sec	2003_12	dssp	1r21:A	79.0	0	0	89	71	70	88	80.6	100	90	73	0.0	0.28	0.28	0.29	1.0	0.59	0.59	100.0	0.00	10.0
sec	2003_12	dssp	1rf8:B	55.0	31	83	0	0	67	80	46.8	35	0	50	12.0	0.12	0.15	0.11	0.40	-0.06	0.32	100.0	20.0	31.0
sec	2003_12	dssp	1rji:A	58.1	0	0	0	0	78	72	37.2	0	0	50	3.2	0.05	0.04	0.06	1.0	-0.18	-0.10	100.0	12.0	6.0
sec	2003_12	dssp	1roc:A	73.5	46	36	78	81	73	75	77.2	40	88	72	5.1	0.26	0.27	0.26	0.34	0.62	0.56	100.0	2.0	1.0
sec	2003_12	dssp	1rws:A	44.1	66	36	25	7	44	82	34.2	85	3	33	4.4	0.15	0.19	0.12	0.42	-0.12	0.07	100.0	7.0	29.0
sec	2003_12	dssp	1usm:A	83.1	100	85	80	80	65	80	76.9	100	66	58	0.0	0.59	0.58	0.60	0.87	0.73	0.61	100.0	6.0	0.00

sec	2003_12	dssp	THIS_month:psum	75.2	56	56	45	45	68	74	76.2	82.4	71.9	67.1	4.5	0.34	0.35	0.32	0.69	0.63	0.50	88.8	8.2	10.8

sec	2003_12	dssp	ALL_proteins:psum	75.0	77	82	70	68	75	73	72.2	71.2	75.7	67.8	3.0	0.35	0.35	0.35	0.68	0.60	0.55	8391.4	7.4	6.4
sec	2003_12	dssp	ALL_proteins:sig	11.5	37	38	42	40	15	13	16.0	31.4	26.5	17.0	5.3	0.17	0.17	0.17	0.28	0.28	0.19	8318.7	8.1	8.0
sec	2003_12	dssp	ALL_proteins:errsig	0.60	1	1	2	2	0.79	0.71	0.83	1.6	1.3	0.88	0.27	0.00	0.00	0.00	0.01	0.01	0.01	430.7	0.42	0.41

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2003_12
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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