METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 375 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2003_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_12 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2003_12 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
sec | 2003_12 | dssp | THIS_month:psum | 71.9 | 51 | 55 | 43 | 42 | 72 | 72 | 68.5 | 74.7 | 71.8 | 64.9 | 6.5 | 0.32 | 0.33 | 0.31 | 0.72 | 0.66 | 0.47 | 83.3 | 10.3 | 14.5 |
sec | 2003_12 | dssp | 1izm:A | 72.4 | 73 | 89 | 0 | 0 | 70 | 61 | 77.4 | 84 | 100 | 66 | 1.7 | 0.21 | 0.25 | 0.18 | 0.54 | 1.0 | 0.45 | 0.0 | 11.0 | 6.0 |
sec | 2003_12 | dssp | 1j0w:A | 76.8 | 94 | 69 | 70 | 83 | 76 | 74 | 82.2 | 92 | 79 | 80 | 4.0 | 0.39 | 0.40 | 0.39 | 0.76 | 0.61 | 0.59 | 100.0 | 6.0 | 7.0 |
sec | 2003_12 | dssp | 1j27:A | 69.4 | 77 | 71 | 56 | 95 | 81 | 50 | 71.0 | 64 | 76 | 77 | 8.1 | 0.32 | 0.32 | 0.32 | 0.58 | 0.62 | 0.50 | 100.0 | 3.0 | 17.0 |
sec | 2003_12 | dssp | 1ocs:A | 82.6 | 78 | 100 | 75 | 80 | 90 | 73 | 82.7 | 88 | 92 | 75 | 0.0 | 0.55 | 0.55 | 0.56 | 0.82 | 0.72 | 0.66 | 0.0 | 8.0 | 1.0 |
sec | 2003_12 | dssp | 1pc0:A | 86.9 | 0 | 0 | 100 | 80 | 72 | 100 | 96.7 | 100 | 100 | 93 | 0.0 | 0.54 | 0.53 | 0.56 | 1.0 | 0.76 | 0.76 | 100.0 | 0.00 | 13.0 |
sec | 2003_12 | dssp | 1pd3:A | 87.0 | 90 | 93 | 0 | 0 | 70 | 77 | 72.4 | 71 | 100 | 80 | 3.7 | 0.35 | 0.40 | 0.31 | 0.58 | 1.0 | 0.68 | 100.0 | 1.0 | 3.0 |
sec | 2003_12 | dssp | 1pg6:A | 89.7 | 0 | 0 | 100 | 82 | 80 | 100 | 93.3 | 100 | 96 | 90 | 0.0 | 0.61 | 0.61 | 0.62 | 1.0 | 0.81 | 0.81 | 100.0 | 0.00 | 10.0 |
sec | 2003_12 | dssp | 1q3j:A | 77.8 | 0 | 0 | 0 | 0 | 100 | 77 | 27.2 | 100 | 0 | 34 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 0.00 | 22.0 |
sec | 2003_12 | dssp | 1q7s:A | 78.6 | 76 | 100 | 66 | 100 | 100 | 50 | 81.0 | 87 | 75 | 76 | 0.0 | 0.57 | 0.57 | 0.57 | 0.79 | 0.76 | 0.60 | 0.0 | 11.0 | 10.0 |
sec | 2003_12 | dssp | 1q90:L | 81.2 | 96 | 82 | 0 | 0 | 28 | 66 | 82.8 | 100 | 100 | 21 | 0.0 | 0.12 | 0.09 | 0.16 | 0.34 | 1.0 | 0.34 | 100.0 | 12.0 | 0.00 |
sec | 2003_12 | dssp | 1q90:M | 76.5 | 80 | 92 | 0 | 0 | 33 | 33 | 94.1 | 100 | 100 | 33 | 11.7 | 0.08 | 0.11 | 0.05 | 0.09 | 1.0 | 0.26 | 100.0 | 11.0 | 11.0 |
sec | 2003_12 | dssp | 1q90:N | 19.4 | 0 | 0 | 0 | 0 | 100 | 66 | 19.4 | 0 | 100 | 100 | 70.9 | 0.56 | 0.62 | 0.51 | 1.0 | 1.0 | 0.76 | 100.0 | 80.0 | 70.0 |
sec | 2003_12 | dssp | 1r21:A | 70.0 | 0 | 0 | 82 | 63 | 59 | 80 | 73.7 | 100 | 72 | 74 | 0.0 | 0.14 | 0.14 | 0.14 | 1.0 | 0.42 | 0.42 | 100.0 | 0.00 | 13.0 |
sec | 2003_12 | dssp | 1rf8:B | 62.0 | 40 | 92 | 0 | 0 | 73 | 81 | 44.1 | 46 | 0 | 43 | 9.0 | 0.19 | 0.23 | 0.17 | 0.52 | -0.05 | 0.38 | 100.0 | 18.0 | 25.0 |
sec | 2003_12 | dssp | 1rji:A | 48.4 | 0 | 0 | 0 | 0 | 65 | 68 | 24.2 | 0 | 0 | 32 | 3.2 | 0.07 | 0.07 | 0.08 | 1.0 | -0.24 | -0.21 | 100.0 | 12.0 | 16.0 |
sec | 2003_12 | dssp | 1roc:A | 71.6 | 20 | 42 | 74 | 81 | 80 | 65 | 74.8 | 13 | 91 | 69 | 2.5 | 0.23 | 0.23 | 0.25 | 0.24 | 0.58 | 0.49 | 100.0 | 5.0 | 3.0 |
sec | 2003_12 | dssp | 1rws:A | 61.8 | 100 | 85 | 87 | 22 | 53 | 96 | 59.4 | 100 | 56 | 56 | 0.0 | 0.38 | 0.46 | 0.31 | 0.91 | 0.30 | 0.37 | 100.0 | 1.0 | 33.0 |
sec | 2003_12 | dssp | 1usm:A | 83.1 | 96 | 80 | 76 | 84 | 73 | 86 | 78.2 | 100 | 56 | 70 | 3.8 | 0.51 | 0.51 | 0.52 | 0.79 | 0.73 | 0.70 | 100.0 | 7.0 | 2.0 |
sec | 2003_12 | dssp | THIS_month:psum | 71.9 | 51 | 55 | 43 | 42 | 72 | 72 | 68.5 | 74.7 | 71.8 | 64.9 | 6.5 | 0.32 | 0.33 | 0.31 | 0.72 | 0.66 | 0.47 | 83.3 | 10.3 | 14.5 |
sec | 2003_12 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2003_12 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |