METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp2 |
METHOD url: | APSSP2 |
TYPE : | sec |
NPROT : | 366 |
NWEEKS : | 78 |
NOTE 1 : | here ALL results obtained for APSSP2 in month 2003_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_12 | dssp | ALL_proteins:psum | 74.9 | 79 | 79 | 61 | 73 | 77 | 71 | 71.6 | 76.7 | 71.9 | 69.1 | 3.2 | 0.36 | 0.36 | 0.35 | 0.67 | 0.59 | 0.55 | 8606.5 | 7.6 | 6.6 |
sec | 2003_12 | dssp | ALL_proteins:sig | 11.8 | 31 | 32 | 37 | 43 | 14 | 15 | 16.7 | 24.8 | 27.4 | 17.9 | 5.3 | 0.17 | 0.17 | 0.17 | 0.24 | 0.28 | 0.18 | 8532.2 | 9.0 | 8.0 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.61 | 1 | 1 | 1 | 2 | 0.77 | 0.78 | 0.87 | 1.2 | 1.4 | 0.93 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 445.9 | 0.47 | 0.41 |
sec | 2003_12 | dssp | THIS_month:psum | 75.7 | 56 | 52 | 46 | 47 | 74 | 76 | 75.2 | 80.3 | 75 | 70.2 | 5.5 | 0.35 | 0.36 | 0.34 | 0.75 | 0.66 | 0.54 | 94.4 | 9.5 | 9.1 |
sec | 2003_12 | dssp | 1izm:A | 84.1 | 88 | 89 | 0 | 0 | 76 | 79 | 78.9 | 81 | 100 | 74 | 0.5 | 0.36 | 0.39 | 0.34 | 0.69 | 1.0 | 0.66 | 100.0 | 1.0 | 2.0 |
sec | 2003_12 | dssp | 1j0w:A | 77.8 | 94 | 59 | 68 | 96 | 81 | 75 | 78.3 | 92 | 81 | 69 | 5.0 | 0.43 | 0.45 | 0.43 | 0.68 | 0.71 | 0.64 | 100.0 | 10.0 | 13.0 |
sec | 2003_12 | dssp | 1j27:A | 91.8 | 100 | 97 | 87 | 94 | 86 | 79 | 90.7 | 100 | 83 | 93 | 0.0 | 0.76 | 0.76 | 0.76 | 0.97 | 0.85 | 0.77 | 100.0 | 1.0 | 3.0 |
sec | 2003_12 | dssp | 1ocs:A | 84.1 | 78 | 97 | 82 | 82 | 90 | 76 | 65.1 | 72 | 70 | 58 | 0.7 | 0.56 | 0.56 | 0.57 | 0.81 | 0.77 | 0.70 | 0.0 | 7.0 | 0.00 |
sec | 2003_12 | dssp | 1pc0:A | 75.4 | 0 | 0 | 75 | 82 | 75 | 75 | 87.1 | 100 | 87 | 86 | 1.6 | 0.23 | 0.26 | 0.21 | 1.0 | 0.57 | 0.53 | 100.0 | 4.0 | 4.0 |
sec | 2003_12 | dssp | 1pd3:A | 92.6 | 97 | 93 | 0 | 0 | 70 | 87 | 97.2 | 100 | 100 | 85 | 0.0 | 0.48 | 0.45 | 0.52 | 0.74 | 1.0 | 0.74 | 100.0 | 3.0 | 0.00 |
sec | 2003_12 | dssp | 1pg6:A | 84.6 | 0 | 0 | 84 | 84 | 85 | 85 | 93.3 | 100 | 94 | 92 | 0.0 | 0.38 | 0.38 | 0.38 | 1.0 | 0.69 | 0.69 | 100.0 | 0.00 | 0.00 |
sec | 2003_12 | dssp | 1q3j:A | 75.0 | 0 | 0 | 25 | 40 | 89 | 80 | 60.0 | 100 | 25 | 68 | 0.0 | 0.02 | 0.02 | 0.03 | 1.0 | 0.17 | 0.17 | 100.0 | 0.00 | 8.0 |
sec | 2003_12 | dssp | 1q7s:A | 82.9 | 89 | 100 | 66 | 92 | 92 | 57 | 88.3 | 94 | 80 | 85 | 0.0 | 0.61 | 0.62 | 0.61 | 0.90 | 0.71 | 0.62 | 100.0 | 5.0 | 8.0 |
sec | 2003_12 | dssp | 1q90:L | 78.1 | 92 | 82 | 0 | 0 | 28 | 100 | 84.4 | 100 | 100 | 28 | 6.2 | 0.23 | 0.22 | 0.25 | 0.25 | 1.0 | 0.48 | 100.0 | 9.0 | 6.0 |
sec | 2003_12 | dssp | 1q90:M | 79.4 | 83 | 92 | 0 | 0 | 33 | 25 | 92.2 | 100 | 100 | 11 | 5.8 | 0.05 | 0.07 | 0.04 | 0.12 | 1.0 | 0.20 | 100.0 | 8.0 | 5.0 |
sec | 2003_12 | dssp | 1q90:N | 19.4 | 0 | 0 | 0 | 0 | 100 | 50 | 17.4 | 0 | 100 | 90 | 61.2 | 0.39 | 0.45 | 0.33 | 1.0 | 1.0 | 0.61 | 100.0 | 80.0 | 61.0 |
sec | 2003_12 | dssp | 1r21:A | 79.0 | 0 | 0 | 82 | 74 | 75 | 83 | 82.0 | 100 | 88 | 77 | 0.0 | 0.26 | 0.26 | 0.26 | 1.0 | 0.58 | 0.58 | 100.0 | 0.00 | 4.0 |
sec | 2003_12 | dssp | 1rf8:B | 64.0 | 50 | 69 | 0 | 0 | 71 | 85 | 54.6 | 51 | 0 | 55 | 9.0 | 0.16 | 0.20 | 0.14 | 0.44 | -0.05 | 0.44 | 100.0 | 9.0 | 20.0 |
sec | 2003_12 | dssp | 1rji:A | 67.7 | 0 | 0 | 25 | 20 | 86 | 76 | 50.5 | 0 | 25 | 63 | 3.2 | 0.01 | 0.01 | 0.02 | 1.0 | 0.09 | 0.14 | 100.0 | 12.0 | 3.0 |
sec | 2003_12 | dssp | 1roc:A | 80.0 | 53 | 47 | 80 | 90 | 86 | 77 | 82.2 | 56 | 81 | 89 | 3.8 | 0.40 | 0.41 | 0.40 | 0.44 | 0.73 | 0.67 | 100.0 | 1.0 | 5.0 |
sec | 2003_12 | dssp | 1rws:A | 58.8 | 100 | 31 | 75 | 28 | 51 | 100 | 59.6 | 100 | 45 | 57 | 2.9 | 0.25 | 0.32 | 0.19 | 0.49 | 0.34 | 0.42 | 100.0 | 19.0 | 19.0 |
sec | 2003_12 | dssp | 1usm:A | 88.3 | 100 | 93 | 90 | 79 | 73 | 90 | 92.4 | 100 | 91 | 84 | 0.0 | 0.68 | 0.69 | 0.69 | 0.94 | 0.78 | 0.73 | 100.0 | 2.0 | 3.0 |
sec | 2003_12 | dssp | THIS_month:psum | 75.7 | 56 | 52 | 46 | 47 | 74 | 76 | 75.2 | 80.3 | 75 | 70.2 | 5.5 | 0.35 | 0.36 | 0.34 | 0.75 | 0.66 | 0.54 | 94.4 | 9.5 | 9.1 |
sec | 2003_12 | dssp | ALL_proteins:psum | 74.9 | 79 | 79 | 61 | 73 | 77 | 71 | 71.6 | 76.7 | 71.9 | 69.1 | 3.2 | 0.36 | 0.36 | 0.35 | 0.67 | 0.59 | 0.55 | 8606.5 | 7.6 | 6.6 |
sec | 2003_12 | dssp | ALL_proteins:sig | 11.8 | 31 | 32 | 37 | 43 | 14 | 15 | 16.7 | 24.8 | 27.4 | 17.9 | 5.3 | 0.17 | 0.17 | 0.17 | 0.24 | 0.28 | 0.18 | 8532.2 | 9.0 | 8.0 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.61 | 1 | 1 | 1 | 2 | 0.77 | 0.78 | 0.87 | 1.2 | 1.4 | 0.93 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 445.9 | 0.47 | 0.41 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |