METHOD about: | ../../../doc/explain_methods.html#PX_about_yaspin |
METHOD url: | yaspin |
TYPE : | sec |
NPROT : | 40 |
NWEEKS : | 10 |
NOTE 1 : | here ALL results obtained for yaspin in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 66.5 | 62 | 86 | 73 | 48 | 75 | 70 | 67.2 | 68.4 | 79.7 | 70.3 | 11.6 | 0.37 | 0.38 | 0.35 | 0.58 | 0.48 | 0.54 | 8500.0 | 18.0 | 14.1 |
sec | 2004_02 | dssp | ALL_proteins:sig | 20.3 | 35 | 40 | 53 | 38 | 16 | 18 | 21.1 | 33.8 | 26.6 | 19.2 | 18.5 | 0.21 | 0.21 | 0.21 | 0.32 | 0.40 | 0.22 | 8522.2 | 21.6 | 19.5 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 3.2 | 5 | 6 | 8 | 6 | 2 | 2 | 3.3 | 5.3 | 4.2 | 3.0 | 2.9 | 0.03 | 0.03 | 0.03 | 0.05 | 0.06 | 0.03 | 1347.4 | 3.4 | 3.0 |
sec | 2004_02 | dssp | THIS_month:psum | 60.8 | 45 | 62 | 21 | 20 | 75 | 63 | 63.9 | 60 | 94 | 69.7 | 16.9 | 0.36 | 0.38 | 0.34 | 0.64 | 0.89 | 0.51 | 77.7 | 26.5 | 19.9 |
sec | 2004_02 | dssp | 1nxh:A | 63.4 | 74 | 83 | 0 | 0 | 31 | 34 | 62.4 | 75 | 100 | 24 | 3.2 | 0.09 | 0.12 | 0.08 | 0.31 | 1.0 | 0.10 | 0.0 | 8.0 | 10.0 |
sec | 2004_02 | dssp | 1oj5:A | 79.1 | 96 | 81 | 77 | 82 | 65 | 72 | 75.6 | 98 | 68 | 65 | 0.0 | 0.50 | 0.51 | 0.51 | 0.83 | 0.70 | 0.53 | 0.0 | 5.0 | 2.0 |
sec | 2004_02 | dssp | 1pzq:A | 78.0 | 72 | 96 | 0 | 0 | 84 | 70 | 85.0 | 100 | 100 | 71 | 0.0 | 0.39 | 0.43 | 0.35 | 0.69 | 1.0 | 0.57 | 100.0 | 13.0 | 5.0 |
sec | 2004_02 | dssp | 1pzr:A | 88.1 | 92 | 100 | 0 | 0 | 76 | 81 | 81.5 | 100 | 100 | 55 | 0.0 | 0.68 | 0.78 | 0.58 | 0.88 | 1.0 | 0.70 | 100.0 | 5.0 | 6.0 |
sec | 2004_02 | dssp | 1qz8:A | 73.6 | 0 | 0 | 80 | 73 | 88 | 74 | 78.4 | 0 | 90 | 89 | 9.0 | 0.30 | 0.25 | 0.35 | 1.0 | 0.54 | 0.66 | 0.0 | 12.0 | 4.0 |
sec | 2004_02 | dssp | 1s0y:B | 65.5 | 52 | 86 | 75 | 85 | 78 | 42 | 70.8 | 72 | 87 | 49 | 1.8 | 0.32 | 0.33 | 0.33 | 0.50 | 0.72 | 0.36 | 100.0 | 18.0 | 3.0 |
sec | 2004_02 | dssp | 1s5l:I | 37.8 | 0 | 0 | 0 | 0 | 93 | 100 | 40.5 | 0 | 100 | 100 | 59.4 | 0.84 | 0.83 | 0.85 | 1.0 | 1.0 | 0.94 | 100.0 | 59.0 | 62.0 |
sec | 2004_02 | dssp | 1s5l:J | 18.9 | 0 | 0 | 0 | 0 | 58 | 41 | 19.5 | 0 | 100 | 60 | 40.5 | 0.02 | 0.02 | 0.02 | 1.0 | 1.0 | 0.17 | 100.0 | 67.0 | 54.0 |
sec | 2004_02 | dssp | 1s5l:L | 94.4 | 91 | 100 | 0 | 0 | 100 | 86 | 100.0 | 100 | 100 | 100 | 0.0 | 0.73 | 0.75 | 0.72 | 0.88 | 1.0 | 0.88 | 100.0 | 5.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:M | 20.0 | 0 | 0 | 0 | 0 | 100 | 66 | 20.0 | 0 | 100 | 100 | 70.0 | 0.56 | 0.62 | 0.51 | 1.0 | 1.0 | 0.76 | 100.0 | 80.0 | 70.0 |
sec | 2004_02 | dssp | 1s5l:T | 93.5 | 89 | 100 | 0 | 0 | 100 | 85 | 98.1 | 100 | 100 | 95 | 0.0 | 0.71 | 0.72 | 0.70 | 0.87 | 1.0 | 0.87 | 100.0 | 6.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:X | 15.4 | 6 | 33 | 0 | 0 | 40 | 30 | 21.3 | 12 | 100 | 47 | 46.1 | 0.13 | 0.17 | 0.10 | -0.40 | 1.0 | 0.08 | 100.0 | 58.0 | 51.0 |
sec | 2004_02 | dssp | 1s5l:Z | 31.0 | 26 | 100 | 0 | 0 | 55 | 33 | 40.1 | 38 | 100 | 47 | 44.8 | 0.10 | 0.15 | 0.06 | 0.23 | 1.0 | 0.29 | 100.0 | 62.0 | 51.0 |
sec | 2004_02 | dssp | 1s68:A | 67.8 | 61 | 74 | 72 | 68 | 69 | 64 | 72.7 | 70 | 74 | 73 | 2.5 | 0.25 | 0.25 | 0.26 | 0.56 | 0.57 | 0.40 | 100.0 | 4.0 | 1.0 |
sec | 2004_02 | dssp | 1s6c:B | 61.9 | 42 | 100 | 0 | 0 | 100 | 46 | 65.2 | 64 | 100 | 67 | 0.0 | 0.23 | 0.22 | 0.24 | 0.44 | 1.0 | 0.44 | 100.0 | 38.0 | 0.00 |
sec | 2004_02 | dssp | 1s7b:A | 64.8 | 75 | 78 | 0 | 0 | 40 | 59 | 78.0 | 89 | 100 | 52 | 8.5 | 0.07 | 0.08 | 0.06 | 0.27 | 1.0 | 0.32 | 0.0 | 2.0 | 12.0 |
sec | 2004_02 | dssp | 1ufi:A | 64.6 | 51 | 100 | 0 | 0 | 100 | 61 | 71.5 | 62 | 100 | 94 | 18.7 | 0.39 | 0.50 | 0.28 | 0.47 | 1.0 | 0.69 | 100.0 | 35.0 | 18.0 |
sec | 2004_02 | dssp | 1ujx:A | 78.0 | 0 | 0 | 80 | 60 | 76 | 90 | 69.6 | 100 | 73 | 68 | 0.0 | 0.23 | 0.24 | 0.22 | 1.0 | 0.53 | 0.53 | 100.0 | 0.00 | 10.0 |
sec | 2004_02 | dssp | THIS_month:psum | 60.8 | 45 | 62 | 21 | 20 | 75 | 63 | 63.9 | 60 | 94 | 69.7 | 16.9 | 0.36 | 0.38 | 0.34 | 0.64 | 0.89 | 0.51 | 77.7 | 26.5 | 19.9 |
sec | 2004_02 | dssp | ALL_proteins:psum | 66.5 | 62 | 86 | 73 | 48 | 75 | 70 | 67.2 | 68.4 | 79.7 | 70.3 | 11.6 | 0.37 | 0.38 | 0.35 | 0.58 | 0.48 | 0.54 | 8500.0 | 18.0 | 14.1 |
sec | 2004_02 | dssp | ALL_proteins:sig | 20.3 | 35 | 40 | 53 | 38 | 16 | 18 | 21.1 | 33.8 | 26.6 | 19.2 | 18.5 | 0.21 | 0.21 | 0.21 | 0.32 | 0.40 | 0.22 | 8522.2 | 21.6 | 19.5 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 3.2 | 5 | 6 | 8 | 6 | 2 | 2 | 3.3 | 5.3 | 4.2 | 3.0 | 2.9 | 0.03 | 0.03 | 0.03 | 0.05 | 0.06 | 0.03 | 1347.4 | 3.4 | 3.0 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |