METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 329 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 75.4 | 84 | 78 | 63 | 74 | 74 | 73 | 71.4 | 76.7 | 73.0 | 66.6 | 2.7 | 0.35 | 0.36 | 0.35 | 0.69 | 0.61 | 0.54 | 8632.2 | 7.3 | 6.4 |
sec | 2004_02 | dssp | ALL_proteins:sig | 10.7 | 34 | 32 | 38 | 44 | 17 | 15 | 15.5 | 26.1 | 27.4 | 18.7 | 4.8 | 0.17 | 0.17 | 0.17 | 0.25 | 0.28 | 0.19 | 8558.9 | 7.7 | 7.1 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.59 | 1 | 1 | 2 | 2 | 0.97 | 0.84 | 0.85 | 1.4 | 1.5 | 1.0 | 0.26 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 471.8 | 0.42 | 0.39 |
sec | 2004_02 | dssp | THIS_month:psum | 76.0 | 77 | 78 | 13 | 22 | 71 | 73 | 71.9 | 81.5 | 88.0 | 67.2 | 6.4 | 0.36 | 0.39 | 0.32 | 0.58 | 0.86 | 0.58 | 100 | 10.6 | 8.7 |
sec | 2004_02 | dssp | 1nxh:A | 75.0 | 95 | 76 | 0 | 0 | 18 | 60 | 54.4 | 64 | 100 | 24 | 0.0 | 0.05 | 0.04 | 0.08 | 0.22 | 1.0 | 0.22 | 100.0 | 18.0 | 0.00 |
sec | 2004_02 | dssp | 1oj5:A | 70.3 | 100 | 73 | 29 | 90 | 84 | 62 | 65.2 | 100 | 35 | 63 | 6.5 | 0.42 | 0.40 | 0.45 | 0.78 | 0.41 | 0.54 | 100.0 | 10.0 | 23.0 |
sec | 2004_02 | dssp | 1pzq:A | 85.0 | 87 | 90 | 0 | 0 | 81 | 84 | 78.0 | 100 | 100 | 61 | 0.0 | 0.45 | 0.49 | 0.41 | 0.76 | 1.0 | 0.69 | 100.0 | 1.0 | 3.0 |
sec | 2004_02 | dssp | 1pzr:A | 81.7 | 76 | 96 | 0 | 0 | 94 | 62 | 71.9 | 63 | 100 | 97 | 0.0 | 0.37 | 0.39 | 0.35 | 0.65 | 1.0 | 0.65 | 100.0 | 14.0 | 0.00 |
sec | 2004_02 | dssp | 1qz8:A | 79.3 | 92 | 59 | 70 | 87 | 84 | 81 | 82.4 | 100 | 75 | 85 | 6.3 | 0.42 | 0.44 | 0.41 | 0.69 | 0.64 | 0.70 | 100.0 | 7.0 | 9.0 |
sec | 2004_02 | dssp | 1s0y:B | 56.4 | 64 | 57 | 18 | 60 | 85 | 54 | 65.3 | 89 | 25 | 68 | 21.8 | 0.20 | 0.19 | 0.22 | 0.23 | 0.21 | 0.54 | 100.0 | 5.0 | 20.0 |
sec | 2004_02 | dssp | 1s5l:I | 76.3 | 59 | 100 | 0 | 0 | 100 | 94 | 90.8 | 86 | 100 | 96 | 21.0 | 0.70 | 0.85 | 0.55 | 0.61 | 1.0 | 0.94 | 100.0 | 23.0 | 21.0 |
sec | 2004_02 | dssp | 1s5l:J | 73.7 | 72 | 100 | 0 | 0 | 76 | 62 | 56.7 | 48 | 100 | 84 | 2.6 | 0.39 | 0.47 | 0.32 | 0.68 | 1.0 | 0.50 | 100.0 | 18.0 | 10.0 |
sec | 2004_02 | dssp | 1s5l:L | 89.2 | 91 | 91 | 0 | 0 | 85 | 92 | 75.0 | 100 | 100 | 53 | 2.7 | 0.54 | 0.58 | 0.51 | 0.77 | 1.0 | 0.82 | 100.0 | 0.00 | 2.0 |
sec | 2004_02 | dssp | 1s5l:M | 60.0 | 62 | 83 | 0 | 0 | 50 | 75 | 82.8 | 88 | 100 | 58 | 26.6 | 0.23 | 0.31 | 0.17 | 0.10 | 1.0 | 0.53 | 100.0 | 20.0 | 26.0 |
sec | 2004_02 | dssp | 1s5l:T | 90.3 | 100 | 90 | 0 | 0 | 75 | 100 | 93.5 | 100 | 100 | 83 | 0.0 | 0.64 | 0.68 | 0.62 | 0.86 | 1.0 | 0.80 | 100.0 | 6.0 | 3.0 |
sec | 2004_02 | dssp | 1s5l:X | 75.0 | 86 | 83 | 0 | 0 | 45 | 71 | 40.8 | 37 | 100 | 63 | 5.0 | 0.15 | 0.17 | 0.14 | 0.42 | 1.0 | 0.45 | 100.0 | 2.0 | 7.0 |
sec | 2004_02 | dssp | 1s5l:Z | 67.2 | 69 | 97 | 0 | 0 | 55 | 41 | 88.4 | 95 | 100 | 47 | 13.7 | 0.17 | 0.23 | 0.11 | 0.43 | 1.0 | 0.36 | 100.0 | 24.0 | 18.0 |
sec | 2004_02 | dssp | 1s68:A | 66.1 | 73 | 57 | 58 | 85 | 66 | 64 | 68.0 | 64 | 74 | 65 | 3.4 | 0.25 | 0.25 | 0.25 | 0.49 | 0.61 | 0.38 | 100.0 | 7.0 | 9.0 |
sec | 2004_02 | dssp | 1s6c:B | 85.7 | 92 | 86 | 0 | 0 | 71 | 83 | 67.5 | 69 | 100 | 64 | 0.0 | 0.36 | 0.36 | 0.38 | 0.67 | 1.0 | 0.67 | 100.0 | 4.0 | 0.00 |
sec | 2004_02 | dssp | 1s7b:A | 73.6 | 89 | 76 | 0 | 0 | 39 | 61 | 81.1 | 96 | 100 | 47 | 0.0 | 0.09 | 0.08 | 0.10 | 0.33 | 1.0 | 0.33 | 100.0 | 11.0 | 0.00 |
sec | 2004_02 | dssp | 1ufi:A | 91.7 | 88 | 100 | 0 | 0 | 100 | 92 | 75.0 | 69 | 100 | 100 | 6.2 | 0.74 | 0.87 | 0.62 | 0.82 | 1.0 | 0.94 | 100.0 | 8.0 | 6.0 |
sec | 2004_02 | dssp | 1ujx:A | 73.1 | 0 | 0 | 75 | 79 | 72 | 88 | 57.8 | 100 | 76 | 52 | 0.8 | 0.30 | 0.37 | 0.24 | 1.0 | 0.67 | 0.46 | 100.0 | 14.0 | 1.0 |
sec | 2004_02 | dssp | THIS_month:psum | 76.0 | 77 | 78 | 13 | 22 | 71 | 73 | 71.9 | 81.5 | 88.0 | 67.2 | 6.4 | 0.36 | 0.39 | 0.32 | 0.58 | 0.86 | 0.58 | 100 | 10.6 | 8.7 |
sec | 2004_02 | dssp | ALL_proteins:psum | 75.4 | 84 | 78 | 63 | 74 | 74 | 73 | 71.4 | 76.7 | 73.0 | 66.6 | 2.7 | 0.35 | 0.36 | 0.35 | 0.69 | 0.61 | 0.54 | 8632.2 | 7.3 | 6.4 |
sec | 2004_02 | dssp | ALL_proteins:sig | 10.7 | 34 | 32 | 38 | 44 | 17 | 15 | 15.5 | 26.1 | 27.4 | 18.7 | 4.8 | 0.17 | 0.17 | 0.17 | 0.25 | 0.28 | 0.19 | 8558.9 | 7.7 | 7.1 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.59 | 1 | 1 | 2 | 2 | 0.97 | 0.84 | 0.85 | 1.4 | 1.5 | 1.0 | 0.26 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 471.8 | 0.42 | 0.39 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |