METHOD about: | ../../../doc/explain_methods.html#PX_about_sable |
METHOD url: | SABLE |
TYPE : | sec |
NPROT : | 87 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for SABLE in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2004_02 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
sec | 2004_02 | dssp | THIS_month:psum | 75.0 | 73 | 84 | 16 | 21 | 67 | 68 | 78.4 | 89.8 | 89.5 | 62.4 | 5.1 | 0.38 | 0.42 | 0.34 | 0.63 | 0.86 | 0.52 | 88.8 | 10.1 | 9.1 |
sec | 2004_02 | dssp | 1nxh:A | 69.4 | 82 | 84 | 0 | 0 | 33 | 47 | 57.4 | 65 | 100 | 34 | 3.2 | 0.11 | 0.13 | 0.10 | 0.39 | 1.0 | 0.22 | 0.0 | 1.0 | 9.0 |
sec | 2004_02 | dssp | 1oj5:A | 80.2 | 96 | 93 | 61 | 86 | 84 | 67 | 74.3 | 100 | 57 | 73 | 0.0 | 0.55 | 0.55 | 0.56 | 0.92 | 0.62 | 0.59 | 0.0 | 1.0 | 9.0 |
sec | 2004_02 | dssp | 1pzq:A | 81.7 | 72 | 100 | 0 | 0 | 92 | 73 | 85.3 | 100 | 100 | 72 | 0.0 | 0.48 | 0.52 | 0.45 | 0.73 | 1.0 | 0.65 | 100.0 | 15.0 | 3.0 |
sec | 2004_02 | dssp | 1pzr:A | 83.3 | 85 | 100 | 0 | 0 | 77 | 70 | 80.3 | 97 | 100 | 56 | 0.0 | 0.57 | 0.67 | 0.48 | 0.80 | 1.0 | 0.61 | 100.0 | 9.0 | 6.0 |
sec | 2004_02 | dssp | 1qz8:A | 81.1 | 71 | 100 | 80 | 80 | 84 | 78 | 90.0 | 100 | 90 | 86 | 2.7 | 0.45 | 0.44 | 0.46 | 0.82 | 0.63 | 0.67 | 100.0 | 3.0 | 0.00 |
sec | 2004_02 | dssp | 1s0y:B | 49.1 | 68 | 50 | 12 | 100 | 57 | 42 | 45.7 | 69 | 18 | 34 | 20.0 | 0.09 | 0.08 | 0.11 | 0.11 | 0.30 | 0.27 | 100.0 | 16.0 | 25.0 |
sec | 2004_02 | dssp | 1s5l:I | 89.5 | 81 | 100 | 0 | 0 | 100 | 100 | 100.0 | 100 | 100 | 100 | 10.5 | 0.85 | 1.0 | 0.71 | 0.80 | 1.0 | 1.0 | 100.0 | 10.0 | 10.0 |
sec | 2004_02 | dssp | 1s5l:J | 52.6 | 48 | 100 | 0 | 0 | 61 | 53 | 67.6 | 72 | 100 | 59 | 15.7 | 0.21 | 0.26 | 0.16 | 0.48 | 1.0 | 0.32 | 100.0 | 34.0 | 28.0 |
sec | 2004_02 | dssp | 1s5l:L | 94.6 | 95 | 100 | 0 | 0 | 92 | 92 | 79.0 | 100 | 100 | 61 | 0.0 | 0.79 | 0.85 | 0.73 | 0.94 | 1.0 | 0.88 | 100.0 | 2.0 | 2.0 |
sec | 2004_02 | dssp | 1s5l:M | 83.3 | 95 | 100 | 0 | 0 | 33 | 66 | 85.0 | 100 | 100 | 25 | 0.0 | 0.74 | 0.87 | 0.62 | 0.90 | 1.0 | 0.38 | 100.0 | 3.0 | 13.0 |
sec | 2004_02 | dssp | 1s5l:T | 87.1 | 89 | 94 | 0 | 0 | 83 | 100 | 100.0 | 100 | 100 | 100 | 6.4 | 0.62 | 0.72 | 0.53 | 0.80 | 1.0 | 0.86 | 100.0 | 3.0 | 9.0 |
sec | 2004_02 | dssp | 1s5l:X | 77.5 | 96 | 77 | 0 | 0 | 27 | 75 | 82.5 | 100 | 100 | 36 | 0.0 | 0.13 | 0.09 | 0.17 | 0.35 | 1.0 | 0.35 | 100.0 | 17.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:Z | 65.5 | 67 | 97 | 0 | 0 | 55 | 35 | 84.4 | 90 | 100 | 53 | 12.0 | 0.15 | 0.21 | 0.10 | 0.41 | 1.0 | 0.31 | 100.0 | 25.0 | 17.0 |
sec | 2004_02 | dssp | 1s68:A | 64.4 | 60 | 72 | 66 | 56 | 66 | 66 | 68.0 | 69 | 71 | 64 | 6.4 | 0.19 | 0.19 | 0.19 | 0.54 | 0.43 | 0.40 | 100.0 | 4.0 | 4.0 |
sec | 2004_02 | dssp | 1s6c:B | 57.1 | 64 | 81 | 0 | 0 | 42 | 42 | 58.7 | 69 | 100 | 37 | 4.7 | 0.08 | 0.11 | 0.07 | 0.33 | 1.0 | 0.14 | 100.0 | 14.0 | 14.0 |
sec | 2004_02 | dssp | 1s7b:A | 78.3 | 90 | 80 | 0 | 0 | 51 | 70 | 88.4 | 98 | 100 | 66 | 0.0 | 0.17 | 0.16 | 0.19 | 0.46 | 1.0 | 0.46 | 100.0 | 8.0 | 0.00 |
sec | 2004_02 | dssp | 1ufi:A | 77.1 | 71 | 96 | 0 | 0 | 92 | 70 | 90.3 | 88 | 100 | 94 | 10.4 | 0.39 | 0.48 | 0.30 | 0.56 | 1.0 | 0.72 | 100.0 | 18.0 | 10.0 |
sec | 2004_02 | dssp | 1ujx:A | 79.8 | 0 | 0 | 75 | 64 | 81 | 88 | 74.8 | 100 | 75 | 74 | 0.0 | 0.23 | 0.24 | 0.23 | 1.0 | 0.54 | 0.54 | 100.0 | 0.00 | 5.0 |
sec | 2004_02 | dssp | THIS_month:psum | 75.0 | 73 | 84 | 16 | 21 | 67 | 68 | 78.4 | 89.8 | 89.5 | 62.4 | 5.1 | 0.38 | 0.42 | 0.34 | 0.63 | 0.86 | 0.52 | 88.8 | 10.1 | 9.1 |
sec | 2004_02 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2004_02 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |