METHOD about: | ../../../doc/explain_methods.html#PX_about_prospect |
METHOD url: | Prospect |
TYPE : | sec |
NPROT : | 286 |
NWEEKS : | 74 |
NOTE 1 : | here ALL results obtained for Prospect in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 71.4 | 75 | 77 | 58 | 69 | 75 | 69 | 67.9 | 71.1 | 68.0 | 66.1 | 3.5 | 0.31 | 0.31 | 0.31 | 0.63 | 0.55 | 0.50 | 8216.7 | 9.0 | 7.9 |
sec | 2004_02 | dssp | ALL_proteins:sig | 13.6 | 34 | 35 | 38 | 44 | 14 | 15 | 18.0 | 28.7 | 31.6 | 17.8 | 6.5 | 0.17 | 0.17 | 0.17 | 0.30 | 0.32 | 0.21 | 8148.9 | 10.5 | 10.0 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 2 | 2 | 0.84 | 0.92 | 1.0 | 1.6 | 1.8 | 1.0 | 0.38 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 481.8 | 0.62 | 0.59 |
sec | 2004_02 | dssp | THIS_month:psum | 64.1 | 50 | 69 | 16 | 21 | 78 | 61 | 62.3 | 62.2 | 88.6 | 67.3 | 10.7 | 0.33 | 0.34 | 0.31 | 0.57 | 0.84 | 0.49 | 94.1 | 22.6 | 14.5 |
sec | 2004_02 | dssp | 1oj5:A | 70.3 | 92 | 78 | 35 | 84 | 84 | 60 | 69.7 | 98 | 45 | 68 | 4.3 | 0.37 | 0.36 | 0.40 | 0.78 | 0.43 | 0.51 | 100.0 | 5.0 | 19.0 |
sec | 2004_02 | dssp | 1pzq:A | 80.0 | 69 | 100 | 0 | 0 | 92 | 71 | 85.3 | 100 | 100 | 72 | 0.0 | 0.45 | 0.49 | 0.43 | 0.71 | 1.0 | 0.62 | 100.0 | 16.0 | 3.0 |
sec | 2004_02 | dssp | 1pzr:A | 73.3 | 69 | 100 | 0 | 0 | 83 | 53 | 61.7 | 69 | 100 | 51 | 0.0 | 0.40 | 0.47 | 0.34 | 0.63 | 1.0 | 0.48 | 100.0 | 21.0 | 5.0 |
sec | 2004_02 | dssp | 1qz8:A | 72.1 | 28 | 66 | 74 | 77 | 82 | 67 | 78.4 | 43 | 86 | 79 | 4.5 | 0.25 | 0.24 | 0.27 | 0.38 | 0.56 | 0.54 | 100.0 | 7.0 | 1.0 |
sec | 2004_02 | dssp | 1s0y:B | 21.8 | 4 | 11 | 18 | 60 | 57 | 19 | 15.0 | 4 | 25 | 23 | 7.2 | 0.13 | 0.11 | 0.16 | -0.30 | 0.21 | -0.23 | 100.0 | 29.0 | 20.0 |
sec | 2004_02 | dssp | 1s5l:I | 42.1 | 0 | 0 | 0 | 0 | 100 | 94 | 40.8 | 0 | 100 | 96 | 55.2 | 0.84 | 0.85 | 0.84 | 1.0 | 1.0 | 0.94 | 100.0 | 57.0 | 55.0 |
sec | 2004_02 | dssp | 1s5l:J | 26.3 | 0 | 0 | 0 | 0 | 76 | 52 | 28.2 | 0 | 100 | 82 | 42.1 | 0.11 | 0.12 | 0.11 | 1.0 | 1.0 | 0.38 | 100.0 | 65.0 | 50.0 |
sec | 2004_02 | dssp | 1s5l:L | 83.8 | 82 | 100 | 0 | 0 | 85 | 75 | 76.2 | 100 | 100 | 56 | 0.0 | 0.56 | 0.63 | 0.49 | 0.80 | 1.0 | 0.66 | 100.0 | 10.0 | 5.0 |
sec | 2004_02 | dssp | 1s5l:M | 56.7 | 58 | 82 | 0 | 0 | 50 | 37 | 46.0 | 44 | 100 | 58 | 16.6 | 0.09 | 0.12 | 0.06 | 0.06 | 1.0 | 0.26 | 100.0 | 23.0 | 16.0 |
sec | 2004_02 | dssp | 1s5l:T | 64.5 | 42 | 100 | 0 | 0 | 100 | 52 | 45.4 | 31 | 100 | 89 | 0.0 | 0.24 | 0.23 | 0.27 | 0.46 | 1.0 | 0.46 | 100.0 | 35.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:X | 80.0 | 72 | 100 | 0 | 0 | 100 | 57 | 95.0 | 100 | 100 | 81 | 0.0 | 0.41 | 0.45 | 0.38 | 0.64 | 1.0 | 0.64 | 100.0 | 19.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:Z | 41.4 | 38 | 95 | 0 | 0 | 55 | 33 | 56.8 | 58 | 100 | 47 | 34.4 | 0.07 | 0.10 | 0.04 | 0.21 | 1.0 | 0.29 | 100.0 | 50.0 | 39.0 |
sec | 2004_02 | dssp | 1s68:A | 69.5 | 66 | 75 | 63 | 75 | 76 | 63 | 66.5 | 72 | 75 | 58 | 1.7 | 0.28 | 0.28 | 0.29 | 0.60 | 0.57 | 0.43 | 100.0 | 3.0 | 4.0 |
sec | 2004_02 | dssp | 1s6c:B | 90.5 | 100 | 87 | 0 | 0 | 71 | 100 | 90.5 | 100 | 100 | 71 | 0.0 | 0.59 | 0.55 | 0.64 | 0.79 | 1.0 | 0.79 | 100.0 | 9.0 | 0.00 |
sec | 2004_02 | dssp | 1s7b:A | 60.4 | 64 | 87 | 0 | 0 | 51 | 65 | 73.9 | 78 | 100 | 63 | 16.0 | 0.13 | 0.17 | 0.10 | 0.39 | 1.0 | 0.42 | 0.0 | 17.0 | 24.0 |
sec | 2004_02 | dssp | 1ufi:A | 81.2 | 77 | 96 | 0 | 0 | 92 | 60 | 67.0 | 61 | 100 | 92 | 0.0 | 0.34 | 0.37 | 0.31 | 0.62 | 1.0 | 0.62 | 100.0 | 14.0 | 0.00 |
sec | 2004_02 | dssp | 1ujx:A | 76.5 | 0 | 0 | 83 | 66 | 73 | 91 | 63.3 | 100 | 76 | 59 | 0.0 | 0.28 | 0.33 | 0.24 | 1.0 | 0.61 | 0.52 | 100.0 | 5.0 | 7.0 |
sec | 2004_02 | dssp | THIS_month:psum | 64.1 | 50 | 69 | 16 | 21 | 78 | 61 | 62.3 | 62.2 | 88.6 | 67.3 | 10.7 | 0.33 | 0.34 | 0.31 | 0.57 | 0.84 | 0.49 | 94.1 | 22.6 | 14.5 |
sec | 2004_02 | dssp | ALL_proteins:psum | 71.4 | 75 | 77 | 58 | 69 | 75 | 69 | 67.9 | 71.1 | 68.0 | 66.1 | 3.5 | 0.31 | 0.31 | 0.31 | 0.63 | 0.55 | 0.50 | 8216.7 | 9.0 | 7.9 |
sec | 2004_02 | dssp | ALL_proteins:sig | 13.6 | 34 | 35 | 38 | 44 | 14 | 15 | 18.0 | 28.7 | 31.6 | 17.8 | 6.5 | 0.17 | 0.17 | 0.17 | 0.30 | 0.32 | 0.21 | 8148.9 | 10.5 | 10.0 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 2 | 2 | 0.84 | 0.92 | 1.0 | 1.6 | 1.8 | 1.0 | 0.38 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 481.8 | 0.62 | 0.59 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |