METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 373 |
NWEEKS : | 78 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 75.0 | 77 | 82 | 70 | 68 | 75 | 73 | 72.2 | 71.2 | 75.7 | 67.8 | 3.0 | 0.35 | 0.35 | 0.35 | 0.68 | 0.60 | 0.55 | 8391.4 | 7.4 | 6.4 |
sec | 2004_02 | dssp | ALL_proteins:sig | 11.5 | 37 | 38 | 42 | 40 | 15 | 13 | 16.0 | 31.4 | 26.5 | 17.0 | 5.3 | 0.17 | 0.17 | 0.17 | 0.28 | 0.28 | 0.19 | 8318.7 | 8.1 | 8.0 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.60 | 1 | 1 | 2 | 2 | 0.79 | 0.71 | 0.83 | 1.6 | 1.3 | 0.88 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 430.7 | 0.42 | 0.41 |
sec | 2004_02 | dssp | THIS_month:psum | 76.2 | 66 | 83 | 21 | 20 | 79 | 71 | 77.9 | 76.2 | 94.8 | 77.7 | 6.0 | 0.40 | 0.42 | 0.37 | 0.67 | 0.89 | 0.61 | 77.7 | 13.5 | 8.2 |
sec | 2004_02 | dssp | 1nxh:A | 79.0 | 83 | 88 | 0 | 0 | 66 | 66 | 77.0 | 79 | 100 | 71 | 3.2 | 0.21 | 0.24 | 0.19 | 0.51 | 1.0 | 0.54 | 100.0 | 4.0 | 4.0 |
sec | 2004_02 | dssp | 1oj5:A | 85.7 | 96 | 93 | 77 | 88 | 84 | 77 | 84.8 | 97 | 83 | 74 | 0.0 | 0.61 | 0.61 | 0.62 | 0.92 | 0.75 | 0.69 | 0.0 | 1.0 | 4.0 |
sec | 2004_02 | dssp | 1pzq:A | 88.3 | 78 | 100 | 0 | 0 | 100 | 79 | 100.0 | 100 | 100 | 100 | 0.0 | 0.58 | 0.58 | 0.58 | 0.79 | 1.0 | 0.79 | 100.0 | 11.0 | 0.00 |
sec | 2004_02 | dssp | 1pzr:A | 90.0 | 85 | 100 | 0 | 0 | 100 | 75 | 98.3 | 97 | 100 | 100 | 0.0 | 0.60 | 0.63 | 0.57 | 0.80 | 1.0 | 0.80 | 100.0 | 9.0 | 0.00 |
sec | 2004_02 | dssp | 1qz8:A | 73.0 | 0 | 0 | 82 | 72 | 84 | 73 | 77.1 | 0 | 90 | 85 | 8.1 | 0.26 | 0.22 | 0.32 | 1.0 | 0.55 | 0.62 | 0.0 | 12.0 | 6.0 |
sec | 2004_02 | dssp | 1s0y:B | 76.4 | 72 | 100 | 75 | 80 | 85 | 54 | 76.2 | 76 | 87 | 63 | 1.8 | 0.46 | 0.47 | 0.46 | 0.76 | 0.68 | 0.54 | 100.0 | 12.0 | 1.0 |
sec | 2004_02 | dssp | 1s5l:I | 71.1 | 50 | 100 | 0 | 0 | 100 | 88 | 82.9 | 72 | 100 | 96 | 23.6 | 0.62 | 0.76 | 0.49 | 0.54 | 1.0 | 0.89 | 100.0 | 28.0 | 23.0 |
sec | 2004_02 | dssp | 1s5l:J | 65.8 | 60 | 93 | 0 | 0 | 76 | 62 | 86.3 | 88 | 100 | 82 | 10.5 | 0.20 | 0.26 | 0.16 | 0.50 | 1.0 | 0.50 | 100.0 | 23.0 | 15.0 |
sec | 2004_02 | dssp | 1s5l:L | 81.1 | 82 | 100 | 0 | 0 | 78 | 73 | 76.1 | 100 | 100 | 55 | 0.0 | 0.55 | 0.65 | 0.47 | 0.80 | 1.0 | 0.60 | 100.0 | 10.0 | 8.0 |
sec | 2004_02 | dssp | 1s5l:M | 80.0 | 79 | 95 | 0 | 0 | 83 | 71 | 62.6 | 59 | 100 | 91 | 10.0 | 0.36 | 0.46 | 0.27 | 0.53 | 1.0 | 0.70 | 100.0 | 13.0 | 10.0 |
sec | 2004_02 | dssp | 1s5l:T | 100.0 | 100 | 100 | 0 | 0 | 100 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 100.0 | 0.00 | 0.00 |
sec | 2004_02 | dssp | 1s5l:X | 82.5 | 96 | 82 | 0 | 0 | 45 | 83 | 90.0 | 100 | 100 | 63 | 0.0 | 0.25 | 0.21 | 0.29 | 0.52 | 1.0 | 0.52 | 100.0 | 12.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:Z | 39.7 | 34 | 100 | 0 | 0 | 66 | 26 | 53.6 | 51 | 100 | 67 | 25.8 | 0.10 | 0.15 | 0.06 | 0.27 | 1.0 | 0.23 | 100.0 | 55.0 | 31.0 |
sec | 2004_02 | dssp | 1s68:A | 73.4 | 70 | 92 | 69 | 72 | 78 | 66 | 67.9 | 63 | 73 | 67 | 0.0 | 0.39 | 0.38 | 0.40 | 0.74 | 0.59 | 0.47 | 100.0 | 6.0 | 1.0 |
sec | 2004_02 | dssp | 1s6c:B | 85.7 | 92 | 86 | 0 | 0 | 71 | 83 | 67.1 | 64 | 100 | 71 | 0.0 | 0.36 | 0.36 | 0.38 | 0.67 | 1.0 | 0.67 | 100.0 | 4.0 | 0.00 |
sec | 2004_02 | dssp | 1s7b:A | 68.9 | 76 | 82 | 0 | 0 | 51 | 62 | 78.6 | 84 | 100 | 63 | 6.6 | 0.11 | 0.14 | 0.10 | 0.38 | 1.0 | 0.40 | 0.0 | 4.0 | 10.0 |
sec | 2004_02 | dssp | 1ufi:A | 56.2 | 42 | 93 | 0 | 0 | 92 | 52 | 53.4 | 42 | 100 | 81 | 18.7 | 0.23 | 0.30 | 0.17 | 0.33 | 1.0 | 0.54 | 100.0 | 39.0 | 18.0 |
sec | 2004_02 | dssp | 1ujx:A | 75.6 | 0 | 0 | 88 | 56 | 69 | 93 | 71.9 | 100 | 75 | 70 | 0.0 | 0.24 | 0.26 | 0.23 | 1.0 | 0.54 | 0.54 | 0.0 | 0.00 | 17.0 |
sec | 2004_02 | dssp | THIS_month:psum | 76.2 | 66 | 83 | 21 | 20 | 79 | 71 | 77.9 | 76.2 | 94.8 | 77.7 | 6.0 | 0.40 | 0.42 | 0.37 | 0.67 | 0.89 | 0.61 | 77.7 | 13.5 | 8.2 |
sec | 2004_02 | dssp | ALL_proteins:psum | 75.0 | 77 | 82 | 70 | 68 | 75 | 73 | 72.2 | 71.2 | 75.7 | 67.8 | 3.0 | 0.35 | 0.35 | 0.35 | 0.68 | 0.60 | 0.55 | 8391.4 | 7.4 | 6.4 |
sec | 2004_02 | dssp | ALL_proteins:sig | 11.5 | 37 | 38 | 42 | 40 | 15 | 13 | 16.0 | 31.4 | 26.5 | 17.0 | 5.3 | 0.17 | 0.17 | 0.17 | 0.28 | 0.28 | 0.19 | 8318.7 | 8.1 | 8.0 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.60 | 1 | 1 | 2 | 2 | 0.79 | 0.71 | 0.83 | 1.6 | 1.3 | 0.88 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 430.7 | 0.42 | 0.41 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |