METHOD about: | ../../../doc/explain_methods.html#PX_about_jufo |
METHOD url: | JUFO |
TYPE : | sec |
NPROT : | 133 |
NWEEKS : | 38 |
NOTE 1 : | here ALL results obtained for JUFO in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
sec | 2004_02 | dssp | ALL_proteins:sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
sec | 2004_02 | dssp | THIS_month:psum | 68.7 | 54 | 83 | 13 | 22 | 87 | 63 | 71.5 | 70.4 | 85.2 | 75.7 | 9.0 | 0.35 | 0.38 | 0.31 | 0.54 | 0.83 | 0.57 | 94.1 | 18.9 | 13.0 |
sec | 2004_02 | dssp | 1oj5:A | 74.7 | 92 | 96 | 38 | 92 | 93 | 58 | 67.4 | 100 | 43 | 61 | 0.0 | 0.54 | 0.51 | 0.58 | 0.92 | 0.50 | 0.55 | 100.0 | 1.0 | 19.0 |
sec | 2004_02 | dssp | 1pzq:A | 85.0 | 75 | 96 | 0 | 0 | 96 | 76 | 100.0 | 100 | 100 | 100 | 0.0 | 0.44 | 0.45 | 0.45 | 0.72 | 1.0 | 0.72 | 100.0 | 11.0 | 0.00 |
sec | 2004_02 | dssp | 1pzr:A | 83.3 | 80 | 94 | 0 | 0 | 88 | 66 | 79.9 | 90 | 100 | 65 | 0.0 | 0.35 | 0.37 | 0.34 | 0.65 | 1.0 | 0.65 | 100.0 | 9.0 | 0.00 |
sec | 2004_02 | dssp | 1qz8:A | 61.3 | 0 | 0 | 58 | 71 | 82 | 57 | 63.4 | 0 | 66 | 79 | 6.3 | 0.13 | 0.12 | 0.15 | -0.06 | 0.39 | 0.39 | 100.0 | 9.0 | 8.0 |
sec | 2004_02 | dssp | 1s0y:B | 47.3 | 44 | 61 | 12 | 100 | 92 | 37 | 45.2 | 62 | 18 | 44 | 10.9 | 0.12 | 0.10 | 0.15 | 0.21 | 0.30 | 0.35 | 100.0 | 12.0 | 25.0 |
sec | 2004_02 | dssp | 1s5l:I | 55.3 | 22 | 100 | 0 | 0 | 100 | 80 | 58.8 | 31 | 100 | 95 | 34.2 | 0.52 | 0.61 | 0.43 | 0.33 | 1.0 | 0.80 | 100.0 | 44.0 | 34.0 |
sec | 2004_02 | dssp | 1s5l:J | 28.9 | 16 | 100 | 0 | 0 | 53 | 46 | 33.3 | 24 | 100 | 51 | 34.2 | 0.07 | 0.09 | 0.06 | 0.24 | 1.0 | 0.21 | 100.0 | 55.0 | 50.0 |
sec | 2004_02 | dssp | 1s5l:L | 89.2 | 82 | 100 | 0 | 0 | 100 | 77 | 98.0 | 100 | 100 | 94 | 0.0 | 0.59 | 0.61 | 0.58 | 0.80 | 1.0 | 0.80 | 100.0 | 10.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:M | 70.0 | 62 | 100 | 0 | 0 | 100 | 75 | 91.7 | 91 | 100 | 91 | 23.3 | 0.51 | 0.70 | 0.34 | 0.50 | 1.0 | 0.82 | 100.0 | 30.0 | 23.0 |
sec | 2004_02 | dssp | 1s5l:T | 83.9 | 73 | 100 | 0 | 0 | 100 | 100 | 100.0 | 100 | 100 | 100 | 16.1 | 0.82 | 1.0 | 0.65 | 0.72 | 1.0 | 1.0 | 100.0 | 16.0 | 16.0 |
sec | 2004_02 | dssp | 1s5l:X | 72.5 | 79 | 88 | 0 | 0 | 54 | 50 | 58.5 | 55 | 100 | 72 | 0.0 | 0.21 | 0.25 | 0.19 | 0.48 | 1.0 | 0.32 | 100.0 | 7.0 | 5.0 |
sec | 2004_02 | dssp | 1s5l:Z | 58.6 | 51 | 100 | 0 | 0 | 100 | 34 | 65.6 | 67 | 100 | 56 | 12.0 | 0.23 | 0.33 | 0.14 | 0.37 | 1.0 | 0.47 | 100.0 | 41.0 | 12.0 |
sec | 2004_02 | dssp | 1s68:A | 68.2 | 60 | 84 | 55 | 73 | 82 | 60 | 64.3 | 60 | 64 | 66 | 1.2 | 0.27 | 0.26 | 0.29 | 0.62 | 0.51 | 0.42 | 100.0 | 8.0 | 6.0 |
sec | 2004_02 | dssp | 1s6c:B | 76.2 | 64 | 100 | 0 | 0 | 100 | 58 | 66.1 | 64 | 100 | 69 | 0.0 | 0.37 | 0.39 | 0.36 | 0.61 | 1.0 | 0.61 | 100.0 | 23.0 | 0.00 |
sec | 2004_02 | dssp | 1s7b:A | 70.8 | 68 | 92 | 0 | 0 | 75 | 65 | 83.9 | 82 | 100 | 87 | 9.4 | 0.23 | 0.28 | 0.18 | 0.52 | 1.0 | 0.55 | 0.0 | 17.0 | 13.0 |
sec | 2004_02 | dssp | 1ufi:A | 70.8 | 60 | 100 | 0 | 0 | 100 | 54 | 77.8 | 71 | 100 | 94 | 6.2 | 0.34 | 0.41 | 0.27 | 0.53 | 1.0 | 0.60 | 100.0 | 29.0 | 6.0 |
sec | 2004_02 | dssp | 1ujx:A | 73.1 | 0 | 0 | 63 | 54 | 77 | 83 | 62.4 | 100 | 59 | 63 | 0.0 | 0.12 | 0.12 | 0.12 | 1.0 | 0.39 | 0.39 | 100.0 | 0.00 | 5.0 |
sec | 2004_02 | dssp | THIS_month:psum | 68.7 | 54 | 83 | 13 | 22 | 87 | 63 | 71.5 | 70.4 | 85.2 | 75.7 | 9.0 | 0.35 | 0.38 | 0.31 | 0.54 | 0.83 | 0.57 | 94.1 | 18.9 | 13.0 |
sec | 2004_02 | dssp | ALL_proteins:psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
sec | 2004_02 | dssp | ALL_proteins:sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |