METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp2 |
METHOD url: | APSSP2 |
TYPE : | sec |
NPROT : | 366 |
NWEEKS : | 78 |
NOTE 1 : | here ALL results obtained for APSSP2 in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 74.9 | 79 | 79 | 61 | 73 | 77 | 71 | 71.6 | 76.7 | 71.9 | 69.1 | 3.2 | 0.36 | 0.36 | 0.35 | 0.67 | 0.59 | 0.55 | 8606.5 | 7.6 | 6.6 |
sec | 2004_02 | dssp | ALL_proteins:sig | 11.8 | 31 | 32 | 37 | 43 | 14 | 15 | 16.7 | 24.8 | 27.4 | 17.9 | 5.3 | 0.17 | 0.17 | 0.17 | 0.24 | 0.28 | 0.18 | 8532.2 | 9.0 | 8.0 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.61 | 1 | 1 | 1 | 2 | 0.77 | 0.78 | 0.87 | 1.2 | 1.4 | 0.93 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 445.9 | 0.47 | 0.41 |
sec | 2004_02 | dssp | THIS_month:psum | 74.5 | 69 | 82 | 19 | 20 | 69 | 68 | 77.4 | 83.0 | 90.7 | 67.6 | 5.1 | 0.36 | 0.40 | 0.32 | 0.60 | 0.87 | 0.52 | 94.4 | 9.3 | 8.3 |
sec | 2004_02 | dssp | 1nxh:A | 67.7 | 72 | 82 | 0 | 0 | 54 | 43 | 58.3 | 61 | 100 | 46 | 1.6 | 0.05 | 0.07 | 0.05 | 0.27 | 1.0 | 0.27 | 100.0 | 8.0 | 2.0 |
sec | 2004_02 | dssp | 1oj5:A | 79.1 | 96 | 93 | 58 | 85 | 84 | 65 | 64.5 | 100 | 39 | 74 | 0.0 | 0.55 | 0.54 | 0.56 | 0.92 | 0.59 | 0.58 | 0.0 | 1.0 | 10.0 |
sec | 2004_02 | dssp | 1pzq:A | 90.0 | 84 | 100 | 0 | 0 | 96 | 83 | 88.8 | 100 | 100 | 79 | 0.0 | 0.63 | 0.67 | 0.60 | 0.84 | 1.0 | 0.80 | 100.0 | 8.0 | 1.0 |
sec | 2004_02 | dssp | 1pzr:A | 90.0 | 92 | 100 | 0 | 0 | 83 | 83 | 84.1 | 100 | 100 | 62 | 0.0 | 0.69 | 0.78 | 0.60 | 0.89 | 1.0 | 0.76 | 100.0 | 4.0 | 5.0 |
sec | 2004_02 | dssp | 1qz8:A | 70.3 | 28 | 50 | 74 | 74 | 78 | 69 | 70.3 | 21 | 88 | 78 | 6.3 | 0.21 | 0.20 | 0.22 | 0.31 | 0.52 | 0.52 | 100.0 | 5.0 | 0.00 |
sec | 2004_02 | dssp | 1s0y:B | 67.3 | 64 | 88 | 81 | 72 | 57 | 42 | 67.2 | 76 | 69 | 47 | 1.8 | 0.33 | 0.34 | 0.33 | 0.60 | 0.66 | 0.27 | 100.0 | 12.0 | 3.0 |
sec | 2004_02 | dssp | 1s5l:I | 84.2 | 77 | 94 | 0 | 0 | 93 | 93 | 98.7 | 100 | 100 | 96 | 10.5 | 0.60 | 0.71 | 0.50 | 0.70 | 1.0 | 0.89 | 100.0 | 10.0 | 10.0 |
sec | 2004_02 | dssp | 1s5l:J | 42.1 | 36 | 100 | 0 | 0 | 53 | 46 | 52.6 | 52 | 100 | 53 | 21.0 | 0.14 | 0.18 | 0.11 | 0.40 | 1.0 | 0.21 | 100.0 | 42.0 | 36.0 |
sec | 2004_02 | dssp | 1s5l:L | 91.9 | 86 | 100 | 0 | 0 | 100 | 82 | 98.2 | 100 | 100 | 95 | 0.0 | 0.66 | 0.68 | 0.65 | 0.84 | 1.0 | 0.84 | 100.0 | 8.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:M | 63.3 | 62 | 88 | 0 | 0 | 66 | 80 | 85.8 | 88 | 100 | 75 | 26.6 | 0.32 | 0.42 | 0.22 | 0.23 | 1.0 | 0.67 | 100.0 | 23.0 | 26.0 |
sec | 2004_02 | dssp | 1s5l:T | 87.1 | 84 | 94 | 0 | 0 | 91 | 100 | 100.0 | 100 | 100 | 100 | 9.6 | 0.70 | 0.82 | 0.59 | 0.74 | 1.0 | 0.93 | 100.0 | 6.0 | 9.0 |
sec | 2004_02 | dssp | 1s5l:X | 75.0 | 89 | 83 | 0 | 0 | 36 | 57 | 85.7 | 100 | 100 | 48 | 0.0 | 0.20 | 0.21 | 0.19 | 0.47 | 1.0 | 0.30 | 100.0 | 5.0 | 5.0 |
sec | 2004_02 | dssp | 1s5l:Z | 74.1 | 77 | 97 | 0 | 0 | 55 | 38 | 92.7 | 100 | 100 | 53 | 5.1 | 0.22 | 0.30 | 0.15 | 0.51 | 1.0 | 0.34 | 100.0 | 17.0 | 10.0 |
sec | 2004_02 | dssp | 1s68:A | 67.4 | 67 | 67 | 67 | 74 | 67 | 63 | 64.7 | 61 | 69 | 63 | 1.7 | 0.26 | 0.26 | 0.27 | 0.55 | 0.59 | 0.37 | 100.0 | 0.00 | 2.0 |
sec | 2004_02 | dssp | 1s6c:B | 52.4 | 64 | 81 | 0 | 0 | 28 | 33 | 51.7 | 69 | 100 | 17 | 4.7 | 0.12 | 0.15 | 0.10 | 0.33 | 1.0 | 0.00 | 100.0 | 14.0 | 19.0 |
sec | 2004_02 | dssp | 1s7b:A | 79.2 | 90 | 82 | 0 | 0 | 54 | 72 | 89.0 | 98 | 100 | 68 | 0.0 | 0.21 | 0.21 | 0.22 | 0.51 | 1.0 | 0.49 | 100.0 | 6.0 | 0.00 |
sec | 2004_02 | dssp | 1ufi:A | 87.5 | 91 | 91 | 0 | 0 | 76 | 90 | 74.3 | 69 | 100 | 96 | 4.1 | 0.47 | 0.52 | 0.43 | 0.68 | 1.0 | 0.78 | 100.0 | 0.00 | 4.0 |
sec | 2004_02 | dssp | 1ujx:A | 74.0 | 0 | 0 | 72 | 55 | 74 | 86 | 67.8 | 100 | 69 | 67 | 0.0 | 0.15 | 0.16 | 0.14 | 1.0 | 0.44 | 0.44 | 100.0 | 0.00 | 9.0 |
sec | 2004_02 | dssp | THIS_month:psum | 74.5 | 69 | 82 | 19 | 20 | 69 | 68 | 77.4 | 83.0 | 90.7 | 67.6 | 5.1 | 0.36 | 0.40 | 0.32 | 0.60 | 0.87 | 0.52 | 94.4 | 9.3 | 8.3 |
sec | 2004_02 | dssp | ALL_proteins:psum | 74.9 | 79 | 79 | 61 | 73 | 77 | 71 | 71.6 | 76.7 | 71.9 | 69.1 | 3.2 | 0.36 | 0.36 | 0.35 | 0.67 | 0.59 | 0.55 | 8606.5 | 7.6 | 6.6 |
sec | 2004_02 | dssp | ALL_proteins:sig | 11.8 | 31 | 32 | 37 | 43 | 14 | 15 | 16.7 | 24.8 | 27.4 | 17.9 | 5.3 | 0.17 | 0.17 | 0.17 | 0.24 | 0.28 | 0.18 | 8532.2 | 9.0 | 8.0 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.61 | 1 | 1 | 1 | 2 | 0.77 | 0.78 | 0.87 | 1.2 | 1.4 | 0.93 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 445.9 | 0.47 | 0.41 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |