METHOD about: | ../../../doc/explain_methods.html#PX_about_scratch |
METHOD url: | SCRATCH (SSpro3) |
TYPE : | sec |
NPROT : | 168 |
NWEEKS : | 42 |
NOTE 1 : | here ALL results obtained for SCRATCH (SSpro3) in month 2003_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_12 | dssp | ALL_proteins:psum | 75.5 | 81 | 82 | 65 | 72 | 78 | 73 | 72.0 | 77.9 | 73.8 | 67.9 | 3.3 | 0.36 | 0.36 | 0.35 | 0.70 | 0.61 | 0.58 | 8273.8 | 7.7 | 6.3 |
sec | 2003_12 | dssp | ALL_proteins:sig | 11.3 | 35 | 34 | 41 | 46 | 15 | 15 | 16.2 | 26.3 | 27.7 | 17.3 | 6.5 | 0.16 | 0.17 | 0.16 | 0.26 | 0.30 | 0.20 | 8215.6 | 8.5 | 7.9 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 3 | 3 | 1 | 1 | 1.2 | 2.0 | 2.1 | 1.3 | 0.50 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 633.8 | 0.66 | 0.61 |
sec | 2003_12 | dssp | THIS_month:psum | 75.6 | 48 | 50 | 41 | 46 | 73 | 79 | 73.0 | 83.1 | 75.8 | 68.7 | 6.4 | 0.35 | 0.35 | 0.35 | 0.77 | 0.67 | 0.52 | 91.6 | 9.9 | 10 |
sec | 2003_12 | dssp | 1izm:A | 82.9 | 89 | 91 | 0 | 0 | 71 | 78 | 85.1 | 98 | 100 | 65 | 0.0 | 0.41 | 0.46 | 0.37 | 0.73 | 1.0 | 0.62 | 100.0 | 1.0 | 4.0 |
sec | 2003_12 | dssp | 1j0w:A | 79.8 | 100 | 68 | 63 | 100 | 89 | 73 | 85.0 | 92 | 79 | 87 | 4.0 | 0.52 | 0.53 | 0.52 | 0.78 | 0.70 | 0.68 | 100.0 | 8.0 | 16.0 |
sec | 2003_12 | dssp | 1j27:A | 91.8 | 97 | 97 | 90 | 94 | 86 | 79 | 93.4 | 100 | 100 | 75 | 0.0 | 0.73 | 0.74 | 0.73 | 0.95 | 0.87 | 0.77 | 100.0 | 0.00 | 2.0 |
sec | 2003_12 | dssp | 1pc0:A | 83.6 | 0 | 0 | 87 | 82 | 79 | 85 | 85.2 | 100 | 79 | 93 | 0.0 | 0.35 | 0.36 | 0.36 | 1.0 | 0.67 | 0.67 | 100.0 | 0.00 | 3.0 |
sec | 2003_12 | dssp | 1pg6:A | 82.1 | 0 | 0 | 94 | 75 | 70 | 93 | 88.9 | 100 | 97 | 81 | 0.0 | 0.37 | 0.36 | 0.38 | 1.0 | 0.66 | 0.66 | 100.0 | 0.00 | 12.0 |
sec | 2003_12 | dssp | 1q3j:A | 77.8 | 0 | 0 | 37 | 50 | 89 | 83 | 46.2 | 100 | 25 | 52 | 0.0 | 0.07 | 0.07 | 0.09 | 1.0 | 0.29 | 0.29 | 100.0 | 0.00 | 5.0 |
sec | 2003_12 | dssp | 1q90:L | 81.2 | 92 | 85 | 0 | 0 | 42 | 60 | 88.5 | 100 | 100 | 47 | 0.0 | 0.13 | 0.13 | 0.15 | 0.39 | 1.0 | 0.39 | 100.0 | 6.0 | 0.00 |
sec | 2003_12 | dssp | 1q90:M | 94.1 | 100 | 93 | 0 | 0 | 33 | 100 | 94.1 | 100 | 100 | 33 | 0.0 | 0.41 | 0.26 | 0.58 | 0.55 | 1.0 | 0.55 | 100.0 | 5.0 | 0.00 |
sec | 2003_12 | dssp | 1q90:N | 29.0 | 12 | 100 | 0 | 0 | 100 | 75 | 16.8 | 8 | 100 | 90 | 64.5 | 0.55 | 0.70 | 0.40 | 0.16 | 1.0 | 0.83 | 100.0 | 70.0 | 64.0 |
sec | 2003_12 | dssp | 1r21:A | 71.0 | 0 | 0 | 71 | 70 | 70 | 74 | 79.2 | 100 | 77 | 80 | 0.0 | 0.15 | 0.17 | 0.15 | 1.0 | 0.45 | 0.41 | 100.0 | 2.0 | 0.00 |
sec | 2003_12 | dssp | 1rji:A | 58.1 | 0 | 0 | 0 | 0 | 78 | 69 | 36.2 | 0 | 0 | 48 | 0.0 | 0.09 | 0.07 | 0.12 | 1.0 | -0.16 | -0.25 | 100.0 | 12.0 | 3.0 |
sec | 2003_12 | dssp | 1usm:A | 76.6 | 96 | 69 | 52 | 91 | 73 | 82 | 78.5 | 100 | 53 | 74 | 9.0 | 0.40 | 0.39 | 0.43 | 0.67 | 0.62 | 0.67 | 0.0 | 15.0 | 11.0 |
sec | 2003_12 | dssp | THIS_month:psum | 75.6 | 48 | 50 | 41 | 46 | 73 | 79 | 73.0 | 83.1 | 75.8 | 68.7 | 6.4 | 0.35 | 0.35 | 0.35 | 0.77 | 0.67 | 0.52 | 91.6 | 9.9 | 10 |
sec | 2003_12 | dssp | ALL_proteins:psum | 75.5 | 81 | 82 | 65 | 72 | 78 | 73 | 72.0 | 77.9 | 73.8 | 67.9 | 3.3 | 0.36 | 0.36 | 0.35 | 0.70 | 0.61 | 0.58 | 8273.8 | 7.7 | 6.3 |
sec | 2003_12 | dssp | ALL_proteins:sig | 11.3 | 35 | 34 | 41 | 46 | 15 | 15 | 16.2 | 26.3 | 27.7 | 17.3 | 6.5 | 0.16 | 0.17 | 0.16 | 0.26 | 0.30 | 0.20 | 8215.6 | 8.5 | 7.9 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 3 | 3 | 1 | 1 | 1.2 | 2.0 | 2.1 | 1.3 | 0.50 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 633.8 | 0.66 | 0.61 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |