METHOD about: | ../../../doc/explain_methods.html#PX_about_jufo |
METHOD url: | JUFO |
TYPE : | sec |
NPROT : | 133 |
NWEEKS : | 38 |
NOTE 1 : | here ALL results obtained for JUFO in month 2003_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_12 | dssp | ALL_proteins:psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
sec | 2003_12 | dssp | ALL_proteins:sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
sec | 2003_12 | dssp | THIS_month:psum | 68.8 | 51 | 58 | 31 | 47 | 75 | 60 | 64.1 | 73.8 | 59.4 | 63.1 | 4.0 | 0.58 | 0.71 | 0.45 | 0.63 | 0.54 | 0.37 | 80 | 10 | 14.2 |
sec | 2003_12 | dssp | 1j27:A | 57.1 | 91 | 66 | 17 | 100 | 77 | 39 | 55.5 | 100 | 24 | 42 | 11.2 | 0.27 | 0.25 | 0.29 | 0.63 | 0.32 | 0.36 | 0.0 | 13.0 | 34.0 |
sec | 2003_12 | dssp | 1ocs:A | 67.2 | 66 | 60 | 46 | 100 | 91 | 57 | 81.8 | 100 | 67 | 91 | 3.2 | 0.31 | 0.30 | 0.33 | 0.56 | 0.56 | 0.48 | 100.0 | 1.0 | 24.0 |
sec | 2003_12 | dssp | 1pc0:A | 82.0 | 0 | 0 | 84 | 81 | 79 | 82 | 90.7 | 100 | 88 | 92 | 0.0 | 0.31 | 0.32 | 0.32 | 1.0 | 0.63 | 0.63 | 100.0 | 0.00 | 1.0 |
sec | 2003_12 | dssp | 1pd3:A | 83.3 | 88 | 90 | 0 | 0 | 60 | 54 | 72.8 | 73 | 100 | 68 | 0.0 | 0.18 | 0.19 | 0.18 | 0.46 | 1.0 | 0.46 | 100.0 | 1.0 | 0.00 |
sec | 2003_12 | dssp | 1q3j:A | 75.0 | 0 | 0 | 12 | 50 | 92 | 81 | 54.4 | 100 | 16 | 65 | 2.7 | 0.05 | 0.04 | 0.06 | 1.0 | 0.16 | 0.23 | 100.0 | 5.0 | 16.0 |
sec | 2003_12 | dssp | 1q7s:A | 82.1 | 87 | 96 | 69 | 96 | 88 | 56 | 78.9 | 81 | 75 | 79 | 0.0 | 0.56 | 0.57 | 0.56 | 0.84 | 0.75 | 0.59 | 100.0 | 4.0 | 8.0 |
sec | 2003_12 | dssp | 1q90:L | 68.8 | 72 | 85 | 0 | 0 | 57 | 36 | 54.3 | 53 | 100 | 59 | 0.0 | 0.05 | 0.06 | 0.05 | 0.25 | 1.0 | 0.25 | 100.0 | 12.0 | 0.00 |
sec | 2003_12 | dssp | 1q90:M | 64.7 | 67 | 91 | 0 | 0 | 33 | 9 | 88.7 | 97 | 100 | 3 | 0.0 | 5.2 | 7.0 | 3.3 | 0.00 | 1.0 | 0.00 | 100.0 | 23.0 | 0.00 |
sec | 2003_12 | dssp | 1q90:N | 48.4 | 40 | 100 | 0 | 0 | 83 | 41 | 36.4 | 30 | 100 | 90 | 25.8 | 0.18 | 0.26 | 0.12 | 0.33 | 1.0 | 0.44 | 100.0 | 48.0 | 29.0 |
sec | 2003_12 | dssp | 1r21:A | 64.0 | 0 | 0 | 34 | 80 | 88 | 64 | 46.4 | 100 | 38 | 52 | 3.0 | 0.09 | 0.10 | 0.10 | 1.0 | 0.34 | 0.34 | 0.0 | 5.0 | 26.0 |
sec | 2003_12 | dssp | 1rf8:B | 74.0 | 50 | 94 | 0 | 0 | 86 | 80 | 62.0 | 65 | 0 | 61 | 3.0 | 0.25 | 0.27 | 0.24 | 0.60 | -0.03 | 0.46 | 100.0 | 15.0 | 10.0 |
sec | 2003_12 | dssp | 1rji:A | 61.3 | 0 | 0 | 0 | 0 | 82 | 70 | 42.6 | 0 | 0 | 57 | 0.0 | 0.08 | 0.06 | 0.11 | 1.0 | -0.14 | -0.22 | 100.0 | 12.0 | 0.00 |
sec | 2003_12 | dssp | 1roc:A | 65.8 | 20 | 16 | 57 | 89 | 86 | 62 | 63.0 | 8 | 65 | 71 | 7.0 | 0.22 | 0.22 | 0.23 | 0.08 | 0.55 | 0.49 | 100.0 | 1.0 | 17.0 |
sec | 2003_12 | dssp | 1rws:A | 61.8 | 100 | 100 | 100 | 23 | 51 | 100 | 58.7 | 100 | 61 | 54 | 0.0 | 0.49 | 0.58 | 0.41 | 1.0 | 0.36 | 0.42 | 100.0 | 0.00 | 38.0 |
sec | 2003_12 | dssp | 1usm:A | 77.9 | 96 | 76 | 52 | 91 | 76 | 74 | 76.2 | 100 | 57 | 63 | 5.1 | 0.43 | 0.42 | 0.45 | 0.75 | 0.62 | 0.62 | 0.0 | 10.0 | 11.0 |
sec | 2003_12 | dssp | THIS_month:psum | 68.8 | 51 | 58 | 31 | 47 | 75 | 60 | 64.1 | 73.8 | 59.4 | 63.1 | 4.0 | 0.58 | 0.71 | 0.45 | 0.63 | 0.54 | 0.37 | 80 | 10 | 14.2 |
sec | 2003_12 | dssp | ALL_proteins:psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
sec | 2003_12 | dssp | ALL_proteins:sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |