| METHOD about: | ../../doc/explain_methods.html#PX_about_prof_king |
| METHOD url: | PROF_king |
| METHOD quote: | M Ouali, R King:: Cascaded multiple classifiers for secondary structure prediction. Protein Science, 9, 1162-1176, 1999. |
| TYPE : | sec |
| NPROT : | 375 |
| NWEEKS : | 86 |
| AVE_Q3 : | 72.5 |
| AVE_SOV: | 68.5 |
| NOTE 1 : | here ALL results obtained for prof_king are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2004_04_28 | dssp | psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
| sec | 2004_04_28 | dssp | sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
| sec | 2004_04_28 | dssp | errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | prof_king | ALL | 375 | 72.5 | |
| sec | prof_king | 2001_04 | 1 | 80.9 | old/2001_04_prof_king.html |
| sec | prof_king | 2003_07 | 5 | 76.4 | old/2003_07_prof_king.html |
| sec | prof_king | 2003_08 | 5 | 72.3 | old/2003_08_prof_king.html |
| sec | prof_king | 2003_11 | 16 | 71.5 | old/2003_11_prof_king.html |
| sec | prof_king | 2003_12 | 19 | 72.0 | old/2003_12_prof_king.html |
| sec | prof_king | 2004_01 | 12 | 65.7 | old/2004_01_prof_king.html |
| sec | prof_king | 2004_02 | 18 | 68.2 | old/2004_02_prof_king.html |
| sec | prof_king | 2004_03 | 13 | 73.0 | old/2004_03_prof_king.html |
| sec | prof_king | 2004_04 | 4 | 76.8 | old/2004_04_prof_king.html |
| sec | prof_king | ALL | 375 | 72.5 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |