METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 375 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2004_02 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
sec | 2004_02 | dssp | THIS_month:psum | 68.2 | 57 | 79 | 22 | 20 | 70 | 63 | 70.4 | 69.2 | 93.7 | 65.5 | 9.0 | 0.28 | 0.30 | 0.26 | 0.54 | 0.87 | 0.49 | 88.2 | 17.7 | 12.1 |
sec | 2004_02 | dssp | 1nxh:A | 71.0 | 82 | 79 | 0 | 0 | 39 | 48 | 58.1 | 66 | 100 | 31 | 1.6 | 0.05 | 0.05 | 0.05 | 0.25 | 1.0 | 0.25 | 100.0 | 2.0 | 2.0 |
sec | 2004_02 | dssp | 1oj5:A | 79.1 | 96 | 93 | 67 | 77 | 75 | 68 | 74.2 | 100 | 64 | 65 | 0.0 | 0.53 | 0.53 | 0.53 | 0.92 | 0.59 | 0.55 | 0.0 | 1.0 | 4.0 |
sec | 2004_02 | dssp | 1pzq:A | 86.7 | 84 | 90 | 0 | 0 | 88 | 82 | 83.6 | 74 | 100 | 100 | 0.0 | 0.43 | 0.44 | 0.43 | 0.73 | 1.0 | 0.73 | 100.0 | 3.0 | 0.00 |
sec | 2004_02 | dssp | 1pzr:A | 80.0 | 80 | 100 | 0 | 0 | 77 | 63 | 80.0 | 100 | 100 | 52 | 0.0 | 0.51 | 0.61 | 0.42 | 0.74 | 1.0 | 0.55 | 100.0 | 13.0 | 6.0 |
sec | 2004_02 | dssp | 1qz8:A | 72.1 | 0 | 0 | 84 | 71 | 80 | 72 | 79.0 | 0 | 94 | 85 | 7.2 | 0.24 | 0.20 | 0.29 | 1.0 | 0.55 | 0.58 | 0.0 | 12.0 | 8.0 |
sec | 2004_02 | dssp | 1s0y:B | 67.3 | 56 | 82 | 68 | 84 | 85 | 48 | 74.7 | 76 | 82 | 63 | 5.4 | 0.29 | 0.30 | 0.30 | 0.49 | 0.68 | 0.47 | 100.0 | 14.0 | 5.0 |
sec | 2004_02 | dssp | 1s5l:I | 52.6 | 18 | 100 | 0 | 0 | 100 | 80 | 56.6 | 27 | 100 | 96 | 36.8 | 0.52 | 0.61 | 0.44 | 0.29 | 1.0 | 0.80 | 100.0 | 47.0 | 36.0 |
sec | 2004_02 | dssp | 1s5l:J | 23.7 | 4 | 100 | 0 | 0 | 61 | 40 | 22.9 | 4 | 100 | 59 | 31.5 | 0.02 | 0.03 | 0.02 | 0.11 | 1.0 | 0.12 | 100.0 | 63.0 | 44.0 |
sec | 2004_02 | dssp | 1s5l:L | 62.2 | 52 | 100 | 0 | 0 | 78 | 61 | 66.1 | 78 | 100 | 55 | 10.8 | 0.25 | 0.32 | 0.20 | 0.54 | 1.0 | 0.46 | 100.0 | 29.0 | 18.0 |
sec | 2004_02 | dssp | 1s5l:M | 46.7 | 45 | 78 | 0 | 0 | 50 | 42 | 65.0 | 66 | 100 | 58 | 30.0 | 0.14 | 0.20 | 0.09 | -0.03 | 1.0 | 0.31 | 100.0 | 33.0 | 30.0 |
sec | 2004_02 | dssp | 1s5l:X | 77.5 | 86 | 83 | 0 | 0 | 54 | 60 | 90.0 | 100 | 100 | 63 | 0.0 | 0.14 | 0.14 | 0.14 | 0.42 | 1.0 | 0.42 | 100.0 | 2.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:Z | 56.9 | 57 | 96 | 0 | 0 | 55 | 33 | 79.3 | 84 | 100 | 53 | 18.9 | 0.10 | 0.15 | 0.06 | 0.33 | 1.0 | 0.29 | 100.0 | 34.0 | 24.0 |
sec | 2004_02 | dssp | 1s68:A | 64.8 | 53 | 85 | 72 | 55 | 67 | 64 | 62.5 | 56 | 76 | 58 | 5.1 | 0.22 | 0.22 | 0.23 | 0.59 | 0.45 | 0.39 | 100.0 | 10.0 | 8.0 |
sec | 2004_02 | dssp | 1s6c:B | 90.5 | 100 | 87 | 0 | 0 | 71 | 100 | 69.0 | 67 | 100 | 71 | 0.0 | 0.59 | 0.55 | 0.64 | 0.79 | 1.0 | 0.79 | 100.0 | 9.0 | 0.00 |
sec | 2004_02 | dssp | 1s7b:A | 74.5 | 89 | 77 | 0 | 0 | 42 | 63 | 81.2 | 95 | 100 | 49 | 0.0 | 0.10 | 0.10 | 0.12 | 0.35 | 1.0 | 0.35 | 100.0 | 10.0 | 0.00 |
sec | 2004_02 | dssp | 1ufi:A | 79.2 | 71 | 100 | 0 | 0 | 100 | 65 | 88.0 | 85 | 100 | 94 | 6.2 | 0.44 | 0.54 | 0.36 | 0.63 | 1.0 | 0.72 | 100.0 | 20.0 | 6.0 |
sec | 2004_02 | dssp | 1ujx:A | 74.8 | 0 | 0 | 83 | 55 | 71 | 90 | 66.7 | 100 | 78 | 63 | 0.0 | 0.20 | 0.22 | 0.19 | 1.0 | 0.50 | 0.50 | 100.0 | 0.00 | 15.0 |
sec | 2004_02 | dssp | THIS_month:psum | 68.2 | 57 | 79 | 22 | 20 | 70 | 63 | 70.4 | 69.2 | 93.7 | 65.5 | 9.0 | 0.28 | 0.30 | 0.26 | 0.54 | 0.87 | 0.49 | 88.2 | 17.7 | 12.1 |
sec | 2004_02 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2004_02 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |