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EVA sec results for: PROF_king month: 2004_03

METHOD about:	../../../doc/explain_methods.html#PX_about_prof_king
METHOD url:	PROF_king
TYPE :	sec
NPROT :	375
NWEEKS :	86
NOTE 1 :	here ALL results obtained for PROF_king in month 2004_03 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2004_03 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2004_03	dssp	ALL_proteins:psum	72.4	70	83	68	62	76	69	68.5	65.3	72.5	67.3	3.6	0.31	0.31	0.32	0.65	0.55	0.51	8320.0	9.3	7.5
sec	2004_03	dssp	ALL_proteins:sig	11.3	35	37	40	38	14	13	16.5	31.3	28.4	16.6	6.5	0.15	0.16	0.15	0.25	0.30	0.18	8247.8	9.9	9.5
sec	2004_03	dssp	ALL_proteins:errsig	0.58	1	1	2	1	0.72	0.69	0.85	1.6	1.4	0.85	0.34	0.00	0.00	0.00	0.01	0.01	0.01	425.9	0.51	0.49
sec	2004_03	dssp	THIS_month:psum	73.0	63	82	38	28	77	75	71.0	76.2	67.6	70	3.5	0.36	0.36	0.36	0.67	0.57	0.54	91.6	11	7.7

sec	2004_03	dssp	1nng:A	81.6	57	100	94	78	83	78	79.8	63	93	75	3.5	0.49	0.48	0.52	0.71	0.76	0.68	100.0	9.0	7.0
sec	2004_03	dssp	1oyi:A	72.6	87	87	28	22	65	71	67.2	75	28	67	4.8	0.37	0.38	0.36	0.74	0.14	0.50	100.0	0.00	3.0
sec	2004_03	dssp	1pgy:A	78.7	75	92	0	0	85	60	91.9	97	100	80	0.0	0.26	0.28	0.25	0.56	1.0	0.56	100.0	12.0	0.00
sec	2004_03	dssp	1pjv:A	40.6	22	100	0	0	84	40	25.7	33	0	40	3.1	0.17	0.12	0.23	0.41	-0.21	0.00	100.0	21.0	21.0
sec	2004_03	dssp	1qw2:A	78.4	80	71	83	76	73	85	78.0	83	80	74	3.9	0.43	0.44	0.43	0.67	0.70	0.64	100.0	2.0	2.0
sec	2004_03	dssp	1r4g:A	86.8	86	93	0	0	88	93	82.0	75	100	100	7.5	0.57	0.66	0.49	0.71	1.0	0.86	100.0	5.0	7.0
sec	2004_03	dssp	1rkl:A	91.7	95	91	0	0	84	91	97.2	100	100	92	0.0	0.56	0.56	0.58	0.81	1.0	0.81	100.0	2.0	0.00
sec	2004_03	dssp	1rqt:A	83.8	100	78	0	0	60	100	73.3	100	100	47	0.0	0.46	0.42	0.51	0.68	1.0	0.68	100.0	16.0	0.00
sec	2004_03	dssp	1s4z:C	60.0	0	0	66	18	59	94	58.3	100	42	59	0.0	0.05	0.07	0.03	1.0	0.20	0.15	100.0	6.0	26.0
sec	2004_03	dssp	1v74:A	65.4	35	100	52	64	95	59	48.1	41	57	50	3.7	0.27	0.24	0.31	0.51	0.49	0.48	100.0	23.0	3.0
sec	2004_03	dssp	1v74:B	51.7	37	86	50	5	77	53	55.1	48	16	65	16.0	0.10	0.12	0.09	0.30	0.10	0.38	0.0	35.0	19.0
sec	2004_03	dssp	1vjq:A	84.9	91	95	90	76	75	84	95.7	100	96	91	0.0	0.60	0.60	0.60	0.90	0.75	0.67	100.0	1.0	5.0

sec	2004_03	dssp	THIS_month:psum	73.0	63	82	38	28	77	75	71.0	76.2	67.6	70	3.5	0.36	0.36	0.36	0.67	0.57	0.54	91.6	11	7.7

sec	2004_03	dssp	ALL_proteins:psum	72.4	70	83	68	62	76	69	68.5	65.3	72.5	67.3	3.6	0.31	0.31	0.32	0.65	0.55	0.51	8320.0	9.3	7.5
sec	2004_03	dssp	ALL_proteins:sig	11.3	35	37	40	38	14	13	16.5	31.3	28.4	16.6	6.5	0.15	0.16	0.15	0.25	0.30	0.18	8247.8	9.9	9.5
sec	2004_03	dssp	ALL_proteins:errsig	0.58	1	1	2	1	0.72	0.69	0.85	1.6	1.4	0.85	0.34	0.00	0.00	0.00	0.01	0.01	0.01	425.9	0.51	0.49

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2004_03
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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