METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 375 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2003_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_11 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2003_11 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2003_11 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
sec | 2003_11 | dssp | THIS_month:psum | 71.4 | 53 | 64 | 44 | 54 | 80 | 72 | 68.1 | 69.2 | 69.5 | 68.8 | 5.7 | 0.33 | 0.34 | 0.33 | 0.74 | 0.58 | 0.55 | 80 | 14.3 | 9.2 |
sec | 2003_11 | dssp | 1kg1:A | 61.7 | 0 | 0 | 30 | 80 | 85 | 69 | 44.9 | 100 | 36 | 51 | 8.3 | 0.10 | 0.12 | 0.10 | 1.0 | 0.33 | 0.38 | 100.0 | 13.0 | 26.0 |
sec | 2003_11 | dssp | 1kom:A | 74.2 | 88 | 88 | 47 | 90 | 93 | 67 | 69.9 | 100 | 55 | 76 | 0.0 | 0.40 | 0.38 | 0.44 | 0.87 | 0.52 | 0.52 | 100.0 | 0.00 | 19.0 |
sec | 2003_11 | dssp | 1lmm:A | 80.0 | 0 | 0 | 33 | 75 | 93 | 93 | 73.8 | 100 | 44 | 82 | 10.0 | 0.38 | 0.43 | 0.33 | 1.0 | 0.41 | 0.71 | 100.0 | 12.0 | 12.0 |
sec | 2003_11 | dssp | 1mwq:A | 75.8 | 80 | 93 | 61 | 91 | 86 | 56 | 82.4 | 88 | 88 | 68 | 0.0 | 0.46 | 0.46 | 0.48 | 0.79 | 0.65 | 0.53 | 0.0 | 5.0 | 11.0 |
sec | 2003_11 | dssp | 1mww:A | 71.7 | 56 | 100 | 71 | 83 | 94 | 52 | 75.1 | 72 | 80 | 73 | 2.5 | 0.40 | 0.40 | 0.42 | 0.65 | 0.68 | 0.54 | 0.0 | 18.0 | 4.0 |
sec | 2003_11 | dssp | 1n6j:G | 73.1 | 100 | 63 | 0 | 0 | 50 | 100 | 70.6 | 94 | 100 | 50 | 0.0 | 0.33 | 0.30 | 0.36 | 0.56 | 1.0 | 0.56 | 100.0 | 26.0 | 0.00 |
sec | 2003_11 | dssp | 1oa8:A | 62.5 | 0 | 0 | 71 | 67 | 82 | 58 | 52.5 | 0 | 63 | 62 | 7.0 | 0.15 | 0.12 | 0.19 | 1.0 | 0.47 | 0.42 | 100.0 | 18.0 | 2.0 |
sec | 2003_11 | dssp | 1oh1:A | 80.7 | 0 | 0 | 86 | 71 | 84 | 89 | 85.3 | 0 | 88 | 91 | 5.5 | 0.39 | 0.35 | 0.43 | 1.0 | 0.62 | 0.72 | 0.0 | 5.0 | 8.0 |
sec | 2003_11 | dssp | 1oqj:A | 60.0 | 21 | 100 | 62 | 41 | 79 | 69 | 53.1 | 26 | 67 | 57 | 13.3 | 0.18 | 0.17 | 0.20 | 0.41 | 0.27 | 0.47 | 100.0 | 20.0 | 13.0 |
sec | 2003_11 | dssp | 1px5:A | 80.5 | 85 | 90 | 67 | 75 | 79 | 71 | 84.7 | 94 | 79 | 74 | 0.6 | 0.44 | 0.44 | 0.44 | 0.76 | 0.66 | 0.60 | 100.0 | 2.0 | 1.0 |
sec | 2003_11 | dssp | 1q68:A | 71.1 | 100 | 47 | 0 | 0 | 60 | 100 | 59.5 | 83 | 100 | 54 | 0.0 | 0.30 | 0.34 | 0.28 | 0.53 | 1.0 | 0.53 | 100.0 | 28.0 | 0.00 |
sec | 2003_11 | dssp | 1r5r:A | 84.6 | 85 | 100 | 0 | 0 | 87 | 72 | 90.1 | 100 | 0 | 76 | 0.0 | 0.56 | 0.60 | 0.52 | 0.82 | -0.02 | 0.68 | 100.0 | 9.0 | 2.0 |
sec | 2003_11 | dssp | 1rif:A | 73.8 | 70 | 84 | 72 | 73 | 77 | 66 | 73.8 | 77 | 74 | 70 | 1.7 | 0.33 | 0.34 | 0.34 | 0.64 | 0.66 | 0.50 | 100.0 | 6.0 | 0.00 |
sec | 2003_11 | dssp | 1uf3:A | 73.7 | 68 | 95 | 66 | 69 | 83 | 66 | 68.5 | 74 | 69 | 63 | 3.5 | 0.36 | 0.35 | 0.37 | 0.75 | 0.53 | 0.55 | 100.0 | 8.0 | 1.0 |
sec | 2003_11 | dssp | 1um3:F | 48.5 | 42 | 100 | 0 | 0 | 71 | 55 | 37.3 | 30 | 100 | 85 | 33.3 | 0.22 | 0.31 | 0.15 | 0.36 | 1.0 | 0.51 | 100.0 | 45.0 | 39.0 |
sec | 2003_11 | dssp | THIS_month:psum | 71.4 | 53 | 64 | 44 | 54 | 80 | 72 | 68.1 | 69.2 | 69.5 | 68.8 | 5.7 | 0.33 | 0.34 | 0.33 | 0.74 | 0.58 | 0.55 | 80 | 14.3 | 9.2 |
sec | 2003_11 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2003_11 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2003_11 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |