METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 375 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2003_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_08 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2003_08 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2003_08 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
sec | 2003_08 | dssp | THIS_month:psum | 72.3 | 70 | 91 | 24 | 23 | 70 | 60 | 61.9 | 65 | 73 | 56.5 | 2.7 | 0.22 | 0.22 | 0.22 | 0.52 | 0.69 | 0.45 | 100 | 9.2 | 1.7 |
sec | 2003_08 | dssp | 1ouo:A | 56.7 | 43 | 100 | 33 | 35 | 83 | 48 | 44.4 | 45 | 27 | 50 | 4.2 | 0.20 | 0.19 | 0.22 | 0.54 | 0.21 | 0.31 | 100.0 | 25.0 | 0.00 |
sec | 2003_08 | dssp | 1pv6:A | 81.1 | 88 | 88 | 0 | 0 | 51 | 59 | 59.1 | 62 | 100 | 47 | 2.6 | 0.15 | 0.17 | 0.15 | 0.40 | 1.0 | 0.45 | 100.0 | 0.00 | 2.0 |
sec | 2003_08 | dssp | 1pw4:A | 76.1 | 82 | 84 | 0 | 0 | 61 | 68 | 81.1 | 84 | 100 | 73 | 2.7 | 0.18 | 0.20 | 0.16 | 0.48 | 1.0 | 0.49 | 100.0 | 0.00 | 4.0 |
sec | 2003_08 | dssp | 1q3k:A | 75.3 | 68 | 94 | 63 | 57 | 86 | 67 | 63.2 | 69 | 65 | 56 | 1.5 | 0.35 | 0.35 | 0.36 | 0.68 | 0.54 | 0.55 | 100.0 | 12.0 | 1.0 |
sec | 2003_08 | dssp | THIS_month:psum | 72.3 | 70 | 91 | 24 | 23 | 70 | 60 | 61.9 | 65 | 73 | 56.5 | 2.7 | 0.22 | 0.22 | 0.22 | 0.52 | 0.69 | 0.45 | 100 | 9.2 | 1.7 |
sec | 2003_08 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2003_08 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2003_08 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |