METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 375 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2004_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_01 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2004_01 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
sec | 2004_01 | dssp | THIS_month:psum | 65.7 | 62 | 75 | 47 | 43 | 74 | 65 | 60.9 | 62.5 | 46.8 | 66.3 | 8.0 | 0.23 | 0.22 | 0.23 | 0.48 | 0.43 | 0.46 | 90.9 | 15.8 | 8.7 |
sec | 2004_01 | dssp | 1m36:A | 66.7 | 100 | 50 | 0 | 0 | 63 | 92 | 69.7 | 100 | 0 | 68 | 9.0 | 0.28 | 0.24 | 0.33 | 0.53 | 1.0 | 0.56 | 100.0 | 30.0 | 12.0 |
sec | 2004_01 | dssp | 1nnv:A | 62.6 | 45 | 47 | 73 | 45 | 65 | 82 | 61.9 | 62 | 82 | 56 | 10.2 | 0.16 | 0.17 | 0.16 | 0.31 | 0.43 | 0.47 | 100.0 | 0.00 | 13.0 |
sec | 2004_01 | dssp | 1p57:A | 72.7 | 45 | 76 | 81 | 68 | 78 | 75 | 72.3 | 42 | 85 | 81 | 5.4 | 0.29 | 0.28 | 0.30 | 0.52 | 0.60 | 0.56 | 100.0 | 8.0 | 6.0 |
sec | 2004_01 | dssp | 1p94:A | 63.2 | 43 | 100 | 42 | 37 | 90 | 55 | 70.1 | 64 | 35 | 83 | 2.6 | 0.24 | 0.23 | 0.26 | 0.53 | 0.33 | 0.40 | 100.0 | 27.0 | 1.0 |
sec | 2004_01 | dssp | 1pc6:A | 69.5 | 63 | 88 | 59 | 81 | 83 | 54 | 55.5 | 45 | 68 | 78 | 0.7 | 0.31 | 0.30 | 0.32 | 0.57 | 0.64 | 0.44 | 100.0 | 14.0 | 4.0 |
sec | 2004_01 | dssp | 1q7l:B | 59.1 | 51 | 91 | 25 | 13 | 80 | 65 | 48.8 | 44 | 29 | 58 | 15.9 | 0.22 | 0.23 | 0.22 | 0.53 | 0.00 | 0.50 | 100.0 | 20.0 | 11.0 |
sec | 2004_01 | dssp | 1r2m:A | 60.0 | 80 | 38 | 25 | 70 | 84 | 69 | 67.7 | 100 | 33 | 87 | 15.7 | 0.21 | 0.21 | 0.22 | 0.44 | 0.25 | 0.52 | 100.0 | 15.0 | 25.0 |
sec | 2004_01 | dssp | 1rh5:B | 60.7 | 61 | 93 | 50 | 7 | 57 | 33 | 34.9 | 34 | 28 | 37 | 19.6 | 0.11 | 0.15 | 0.08 | 0.29 | 0.12 | 0.32 | 100.0 | 28.0 | 19.0 |
sec | 2004_01 | dssp | 1rhz:A | 76.9 | 88 | 78 | 61 | 44 | 58 | 76 | 69.2 | 74 | 53 | 60 | 1.8 | 0.24 | 0.24 | 0.25 | 0.53 | 0.50 | 0.52 | 100.0 | 7.0 | 1.0 |
sec | 2004_01 | dssp | 1rpu:A | 63.8 | 49 | 89 | 61 | 55 | 80 | 57 | 58.3 | 56 | 61 | 57 | 7.2 | 0.22 | 0.22 | 0.23 | 0.54 | 0.43 | 0.44 | 0.0 | 17.0 | 2.0 |
sec | 2004_01 | dssp | 1uhw:A | 67.9 | 58 | 75 | 46 | 60 | 80 | 65 | 62.3 | 67 | 41 | 65 | 0.9 | 0.21 | 0.20 | 0.22 | 0.49 | 0.47 | 0.38 | 100.0 | 8.0 | 2.0 |
sec | 2004_01 | dssp | THIS_month:psum | 65.7 | 62 | 75 | 47 | 43 | 74 | 65 | 60.9 | 62.5 | 46.8 | 66.3 | 8.0 | 0.23 | 0.22 | 0.23 | 0.48 | 0.43 | 0.46 | 90.9 | 15.8 | 8.7 |
sec | 2004_01 | dssp | ALL_proteins:psum | 72.4 | 70 | 83 | 68 | 62 | 76 | 69 | 68.5 | 65.3 | 72.5 | 67.3 | 3.6 | 0.31 | 0.31 | 0.32 | 0.65 | 0.55 | 0.51 | 8320.0 | 9.3 | 7.5 |
sec | 2004_01 | dssp | ALL_proteins:sig | 11.3 | 35 | 37 | 40 | 38 | 14 | 13 | 16.5 | 31.3 | 28.4 | 16.6 | 6.5 | 0.15 | 0.16 | 0.15 | 0.25 | 0.30 | 0.18 | 8247.8 | 9.9 | 9.5 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 0.58 | 1 | 1 | 2 | 1 | 0.72 | 0.69 | 0.85 | 1.6 | 1.4 | 0.85 | 0.34 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 425.9 | 0.51 | 0.49 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |