METHOD about: | ../../../doc/explain_methods.html#PX_about_sable2 |
METHOD url: | SABLE2 |
TYPE : | sec |
NPROT : | 30 |
NWEEKS : | 6 |
NOTE 1 : | here ALL results obtained for SABLE2 in month 2004_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_02 | dssp | ALL_proteins:psum | 76.9 | 89 | 80 | 70 | 65 | 66 | 78 | 73.2 | 85.8 | 79.9 | 59.4 | 2.6 | 0.42 | 0.43 | 0.40 | 0.71 | 0.61 | 0.56 | 9333.3 | 9.5 | 5.4 |
sec | 2004_02 | dssp | ALL_proteins:sig | 14.2 | 29 | 28 | 58 | 54 | 24 | 24 | 21.3 | 22.5 | 33.3 | 27.2 | 4.7 | 0.21 | 0.24 | 0.20 | 0.25 | 0.39 | 0.26 | 9397.9 | 10.0 | 6.3 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 2.5 | 5 | 5 | 10 | 9 | 4 | 4 | 3.8 | 4.1 | 6.0 | 4.9 | 0.86 | 0.04 | 0.04 | 0.03 | 0.04 | 0.07 | 0.04 | 1715.8 | 1.8 | 1.1 |
sec | 2004_02 | dssp | THIS_month:psum | 77.8 | 88 | 84 | 11 | 17 | 55 | 68 | 76.0 | 90 | 91.6 | 50.9 | 3.3 | 0.41 | 0.45 | 0.37 | 0.60 | 0.89 | 0.56 | 92.8 | 8.7 | 7 |
sec | 2004_02 | dssp | 1nxh:A | 75.8 | 96 | 76 | 0 | 0 | 18 | 66 | 48.4 | 58 | 100 | 21 | 0.0 | 0.07 | 0.05 | 0.11 | 0.25 | 1.0 | 0.25 | 100.0 | 19.0 | 0.00 |
sec | 2004_02 | dssp | 1pzq:A | 88.3 | 87 | 96 | 0 | 0 | 88 | 85 | 79.1 | 100 | 100 | 64 | 0.0 | 0.56 | 0.61 | 0.52 | 0.83 | 1.0 | 0.76 | 100.0 | 5.0 | 3.0 |
sec | 2004_02 | dssp | 1pzr:A | 90.0 | 95 | 100 | 0 | 0 | 77 | 87 | 83.1 | 100 | 100 | 60 | 0.0 | 0.73 | 0.83 | 0.64 | 0.92 | 1.0 | 0.75 | 100.0 | 3.0 | 6.0 |
sec | 2004_02 | dssp | 1qz8:A | 79.3 | 92 | 76 | 78 | 83 | 76 | 76 | 84.1 | 100 | 90 | 73 | 0.9 | 0.45 | 0.46 | 0.44 | 0.81 | 0.65 | 0.59 | 100.0 | 2.0 | 2.0 |
sec | 2004_02 | dssp | 1s0y:B | 52.7 | 80 | 51 | 12 | 100 | 50 | 50 | 51.7 | 77 | 18 | 42 | 21.8 | 0.11 | 0.09 | 0.13 | 0.18 | 0.30 | 0.32 | 100.0 | 25.0 | 25.0 |
sec | 2004_02 | dssp | 1s5l:I | 86.8 | 81 | 94 | 0 | 0 | 93 | 100 | 100.0 | 100 | 100 | 100 | 10.5 | 0.72 | 0.85 | 0.61 | 0.74 | 1.0 | 0.94 | 100.0 | 7.0 | 10.0 |
sec | 2004_02 | dssp | 1s5l:J | 78.9 | 88 | 91 | 0 | 0 | 61 | 72 | 79.4 | 88 | 100 | 62 | 0.0 | 0.39 | 0.45 | 0.34 | 0.71 | 1.0 | 0.51 | 100.0 | 2.0 | 7.0 |
sec | 2004_02 | dssp | 1s5l:L | 89.2 | 91 | 100 | 0 | 0 | 85 | 85 | 78.7 | 100 | 100 | 60 | 0.0 | 0.68 | 0.77 | 0.60 | 0.89 | 1.0 | 0.77 | 100.0 | 5.0 | 5.0 |
sec | 2004_02 | dssp | 1s5l:M | 83.3 | 100 | 96 | 0 | 0 | 16 | 100 | 83.3 | 100 | 100 | 16 | 0.0 | 0.69 | 0.72 | 0.68 | 0.89 | 1.0 | 0.37 | 100.0 | 3.0 | 13.0 |
sec | 2004_02 | dssp | 1s5l:T | 87.1 | 89 | 94 | 0 | 0 | 83 | 100 | 100.0 | 100 | 100 | 100 | 6.4 | 0.62 | 0.72 | 0.53 | 0.80 | 1.0 | 0.86 | 100.0 | 3.0 | 9.0 |
sec | 2004_02 | dssp | 1s5l:X | 72.5 | 100 | 72 | 0 | 0 | 0 | 0 | 72.5 | 100 | 100 | 0 | 0.0 | 0.00 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 100.0 | 27.0 | 0.00 |
sec | 2004_02 | dssp | 1s5l:Z | 79.3 | 83 | 97 | 0 | 0 | 55 | 45 | 92.7 | 100 | 100 | 53 | 3.4 | 0.29 | 0.37 | 0.21 | 0.58 | 1.0 | 0.40 | 100.0 | 12.0 | 8.0 |
sec | 2004_02 | dssp | 1s68:A | 69.1 | 83 | 67 | 70 | 66 | 59 | 72 | 67.8 | 74 | 75 | 59 | 3.8 | 0.27 | 0.28 | 0.28 | 0.63 | 0.55 | 0.44 | 0.0 | 6.0 | 1.0 |
sec | 2004_02 | dssp | 1s6c:B | 57.1 | 78 | 73 | 0 | 0 | 14 | 25 | 43.6 | 63 | 100 | 3 | 0.0 | 0.16 | 0.18 | 0.15 | 0.22 | 1.0 | -0.08 | 100.0 | 4.0 | 9.0 |
sec | 2004_02 | dssp | THIS_month:psum | 77.8 | 88 | 84 | 11 | 17 | 55 | 68 | 76.0 | 90 | 91.6 | 50.9 | 3.3 | 0.41 | 0.45 | 0.37 | 0.60 | 0.89 | 0.56 | 92.8 | 8.7 | 7 |
sec | 2004_02 | dssp | ALL_proteins:psum | 76.9 | 89 | 80 | 70 | 65 | 66 | 78 | 73.2 | 85.8 | 79.9 | 59.4 | 2.6 | 0.42 | 0.43 | 0.40 | 0.71 | 0.61 | 0.56 | 9333.3 | 9.5 | 5.4 |
sec | 2004_02 | dssp | ALL_proteins:sig | 14.2 | 29 | 28 | 58 | 54 | 24 | 24 | 21.3 | 22.5 | 33.3 | 27.2 | 4.7 | 0.21 | 0.24 | 0.20 | 0.25 | 0.39 | 0.26 | 9397.9 | 10.0 | 6.3 |
sec | 2004_02 | dssp | ALL_proteins:errsig | 2.5 | 5 | 5 | 10 | 9 | 4 | 4 | 3.8 | 4.1 | 6.0 | 4.9 | 0.86 | 0.04 | 0.04 | 0.03 | 0.04 | 0.07 | 0.04 | 1715.8 | 1.8 | 1.1 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |