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EVA sec results for: SCRATCH (SSpro3) month: 2003_11

METHOD about:	../../../doc/explain_methods.html#PX_about_scratch
METHOD url:	SCRATCH (SSpro3)
TYPE :	sec
NPROT :	168
NWEEKS :	42
NOTE 1 :	here ALL results obtained for SCRATCH (SSpro3) in month 2003_11 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2003_11 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2003_11	dssp	ALL_proteins:psum	75.5	81	82	65	72	78	73	72.0	77.9	73.8	67.9	3.3	0.36	0.36	0.35	0.70	0.61	0.58	8273.8	7.7	6.3
sec	2003_11	dssp	ALL_proteins:sig	11.3	35	34	41	46	15	15	16.2	26.3	27.7	17.3	6.5	0.16	0.17	0.16	0.26	0.30	0.20	8215.6	8.5	7.9
sec	2003_11	dssp	ALL_proteins:errsig	0.87	2	2	3	3	1	1	1.2	2.0	2.1	1.3	0.50	0.01	0.01	0.01	0.02	0.02	0.01	633.8	0.66	0.61
sec	2003_11	dssp	THIS_month:psum	76.8	72	70	31	41	73	75	76.5	82.2	78.8	70.1	3.6	0.35	0.34	0.36	0.65	0.72	0.61	85.7	10.5	6.6

sec	2003_11	dssp	1kg1:A	58.3	0	0	30	80	79	67	41.8	100	39	43	8.3	0.08	0.09	0.07	1.0	0.33	0.30	100.0	16.0	26.0
sec	2003_11	dssp	1kom:A	73.1	88	50	55	91	84	72	83.7	100	71	90	3.2	0.32	0.33	0.32	0.62	0.58	0.53	100.0	7.0	16.0
sec	2003_11	dssp	1lmm:A	75.0	0	0	33	75	87	93	70.5	100	44	78	10.0	0.27	0.33	0.23	1.0	0.41	0.60	100.0	17.0	12.0
sec	2003_11	dssp	1mwq:A	69.7	80	87	52	81	76	51	65.1	68	70	54	1.0	0.37	0.37	0.38	0.75	0.53	0.41	100.0	3.0	12.0
sec	2003_11	dssp	1mww:A	70.8	62	96	60	91	94	50	64.8	55	77	72	0.8	0.41	0.40	0.43	0.67	0.66	0.51	0.0	14.0	10.0
sec	2003_11	dssp	1n6j:G	73.1	100	63	0	0	50	100	70.6	94	100	50	0.0	0.33	0.30	0.36	0.56	1.0	0.56	100.0	26.0	0.00
sec	2003_11	dssp	1oa8:A	65.6	37	47	56	75	88	65	66.6	54	64	74	10.9	0.20	0.20	0.22	0.30	0.45	0.56	100.0	3.0	10.0
sec	2003_11	dssp	1oh1:A	73.4	100	30	68	83	74	83	83.5	90	78	86	4.5	0.31	0.34	0.28	0.50	0.61	0.56	100.0	12.0	7.0
sec	2003_11	dssp	1oqj:A	74.4	43	83	75	62	90	79	74.2	43	79	87	10.0	0.33	0.32	0.35	0.51	0.55	0.69	100.0	12.0	5.0
sec	2003_11	dssp	1p68:A	83.3	91	84	0	0	68	80	83.7	83	100	84	0.0	0.31	0.30	0.32	0.62	1.0	0.62	100.0	4.0	0.00
sec	2003_11	dssp	1pi7:A	84.2	94	94	0	0	0	0	89.5	100	100	0	5.2	0.18	0.19	0.19	0.44	1.0	1.0	100.0	0.00	10.0
sec	2003_11	dssp	1px5:A	83.6	90	89	71	79	79	77	85.8	92	87	75	0.6	0.49	0.49	0.50	0.79	0.71	0.66	100.0	0.00	1.0
sec	2003_11	dssp	1q68:A	78.9	100	55	0	0	71	100	77.2	83	100	75	0.0	0.39	0.43	0.36	0.62	1.0	0.62	100.0	21.0	0.00
sec	2003_11	dssp	1r5r:A	89.7	93	98	50	16	85	85	88.1	100	25	72	0.0	0.63	0.67	0.59	0.89	0.26	0.77	0.0	3.0	3.0
sec	2003_11	dssp	1rif:A	69.9	61	81	65	62	80	65	66.2	60	72	68	6.0	0.25	0.25	0.26	0.55	0.54	0.52	100.0	9.0	1.0
sec	2003_11	dssp	1uf3:A	65.4	86	60	43	83	67	63	62.2	89	49	52	6.5	0.24	0.24	0.26	0.58	0.49	0.41	100.0	12.0	15.0
sec	2003_11	dssp	1ujl:A	81.0	42	100	0	0	100	77	68.6	40	100	90	0.0	0.36	0.29	0.44	0.57	1.0	0.57	100.0	19.0	0.00
sec	2003_11	dssp	1um3:E	81.2	100	78	0	0	40	100	84.4	100	100	50	0.0	0.35	0.27	0.44	0.56	1.0	0.56	100.0	18.0	0.00
sec	2003_11	dssp	1um3:F	93.9	100	92	0	0	71	100	97.0	100	100	85	0.0	0.63	0.58	0.70	0.81	1.0	0.81	100.0	6.0	0.00
sec	2003_11	dssp	1upt:B	93.1	97	93	0	0	76	90	98.3	100	100	92	0.0	0.55	0.53	0.58	0.79	1.0	0.79	100.0	3.0	0.00
sec	2003_11	dssp	1uqv:A	75.3	65	94	0	0	88	78	85.9	77	100	97	9.4	0.34	0.41	0.29	0.60	1.0	0.69	0.0	17.0	11.0

sec	2003_11	dssp	THIS_month:psum	76.8	72	70	31	41	73	75	76.5	82.2	78.8	70.1	3.6	0.35	0.34	0.36	0.65	0.72	0.61	85.7	10.5	6.6

sec	2003_11	dssp	ALL_proteins:psum	75.5	81	82	65	72	78	73	72.0	77.9	73.8	67.9	3.3	0.36	0.36	0.35	0.70	0.61	0.58	8273.8	7.7	6.3
sec	2003_11	dssp	ALL_proteins:sig	11.3	35	34	41	46	15	15	16.2	26.3	27.7	17.3	6.5	0.16	0.17	0.16	0.26	0.30	0.20	8215.6	8.5	7.9
sec	2003_11	dssp	ALL_proteins:errsig	0.87	2	2	3	3	1	1	1.2	2.0	2.1	1.3	0.50	0.01	0.01	0.01	0.02	0.02	0.01	633.8	0.66	0.61

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2003_11
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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