METHOD about: | ../../../doc/explain_methods.html#PX_about_sable |
METHOD url: | SABLE |
TYPE : | sec |
NPROT : | 87 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for SABLE in month 2003_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_11 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2003_11 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2003_11 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
sec | 2003_11 | dssp | THIS_month:psum | 75.1 | 69 | 74 | 25 | 27 | 68 | 71 | 76.5 | 82.4 | 80.0 | 66.9 | 4.3 | 0.30 | 0.31 | 0.3 | 0.54 | 0.76 | 0.58 | 78.5 | 11.5 | 6.3 |
sec | 2003_11 | dssp | 1kg1:A | 56.7 | 0 | 0 | 30 | 80 | 76 | 66 | 44.5 | 100 | 31 | 54 | 8.3 | 0.07 | 0.09 | 0.07 | 1.0 | 0.33 | 0.27 | 100.0 | 18.0 | 26.0 |
sec | 2003_11 | dssp | 1kom:A | 71.0 | 77 | 36 | 57 | 81 | 80 | 78 | 75.5 | 100 | 55 | 87 | 8.6 | 0.27 | 0.29 | 0.26 | 0.46 | 0.52 | 0.59 | 100.0 | 10.0 | 11.0 |
sec | 2003_11 | dssp | 1mww:A | 76.7 | 70 | 97 | 77 | 87 | 85 | 55 | 82.2 | 82 | 87 | 77 | 0.0 | 0.48 | 0.48 | 0.48 | 0.74 | 0.75 | 0.53 | 0.0 | 11.0 | 3.0 |
sec | 2003_11 | dssp | 1n6j:G | 73.1 | 100 | 63 | 0 | 0 | 50 | 100 | 70.6 | 94 | 100 | 50 | 0.0 | 0.33 | 0.30 | 0.36 | 0.56 | 1.0 | 0.56 | 100.0 | 26.0 | 0.00 |
sec | 2003_11 | dssp | 1oa8:A | 75.0 | 50 | 85 | 71 | 76 | 90 | 71 | 68.1 | 54 | 59 | 85 | 7.0 | 0.34 | 0.33 | 0.36 | 0.60 | 0.56 | 0.65 | 100.0 | 7.0 | 2.0 |
sec | 2003_11 | dssp | 1oqj:A | 57.8 | 26 | 75 | 66 | 44 | 69 | 65 | 43.6 | 26 | 64 | 40 | 10.0 | 0.13 | 0.13 | 0.15 | 0.35 | 0.32 | 0.35 | 100.0 | 16.0 | 13.0 |
sec | 2003_11 | dssp | 1p68:A | 85.3 | 88 | 89 | 0 | 0 | 80 | 77 | 85.8 | 84 | 100 | 88 | 0.0 | 0.36 | 0.37 | 0.36 | 0.67 | 1.0 | 0.67 | 100.0 | 0.00 | 0.00 |
sec | 2003_11 | dssp | 1pi7:A | 89.5 | 100 | 89 | 0 | 0 | 0 | 0 | 89.5 | 100 | 100 | 0 | 0.0 | 0.00 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 100.0 | 10.0 | 0.00 |
sec | 2003_11 | dssp | 1r5r:A | 82.1 | 85 | 95 | 50 | 14 | 77 | 72 | 90.9 | 100 | 25 | 77 | 0.0 | 0.44 | 0.48 | 0.40 | 0.75 | 0.24 | 0.60 | 0.0 | 6.0 | 4.0 |
sec | 2003_11 | dssp | 1ujl:A | 73.8 | 57 | 61 | 0 | 0 | 82 | 79 | 81.8 | 57 | 100 | 94 | 0.0 | 0.12 | 0.12 | 0.13 | 0.40 | 1.0 | 0.40 | 100.0 | 2.0 | 0.00 |
sec | 2003_11 | dssp | 1um3:E | 62.5 | 86 | 67 | 0 | 0 | 10 | 100 | 69.7 | 96 | 100 | 10 | 9.3 | 0.13 | 0.12 | 0.16 | -0.05 | 1.0 | 0.26 | 100.0 | 18.0 | 9.0 |
sec | 2003_11 | dssp | 1um3:F | 97.0 | 100 | 96 | 0 | 0 | 85 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 0.78 | 0.75 | 0.82 | 0.90 | 1.0 | 0.90 | 100.0 | 3.0 | 0.00 |
sec | 2003_11 | dssp | 1upt:B | 86.2 | 84 | 100 | 0 | 0 | 92 | 63 | 97.1 | 100 | 100 | 87 | 0.0 | 0.51 | 0.59 | 0.44 | 0.74 | 1.0 | 0.68 | 100.0 | 12.0 | 1.0 |
sec | 2003_11 | dssp | 1uqv:A | 64.7 | 51 | 86 | 0 | 0 | 83 | 76 | 72.7 | 61 | 100 | 88 | 17.6 | 0.27 | 0.33 | 0.21 | 0.41 | 1.0 | 0.64 | 0.0 | 23.0 | 20.0 |
sec | 2003_11 | dssp | THIS_month:psum | 75.1 | 69 | 74 | 25 | 27 | 68 | 71 | 76.5 | 82.4 | 80.0 | 66.9 | 4.3 | 0.30 | 0.31 | 0.3 | 0.54 | 0.76 | 0.58 | 78.5 | 11.5 | 6.3 |
sec | 2003_11 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2003_11 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2003_11 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |