METHOD about: | ../../../doc/explain_methods.html#PX_about_jufo |
METHOD url: | JUFO |
TYPE : | sec |
NPROT : | 133 |
NWEEKS : | 38 |
NOTE 1 : | here ALL results obtained for JUFO in month 2003_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_11 | dssp | ALL_proteins:psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
sec | 2003_11 | dssp | ALL_proteins:sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
sec | 2003_11 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
sec | 2003_11 | dssp | THIS_month:psum | 68.6 | 55 | 62 | 19 | 33 | 74 | 65 | 66.3 | 71.4 | 70.2 | 64.8 | 7.0 | 0.24 | 0.24 | 0.23 | 0.49 | 0.73 | 0.50 | 82.3 | 14.4 | 12.2 |
sec | 2003_11 | dssp | 1kg1:A | 60.0 | 0 | 0 | 26 | 100 | 85 | 67 | 39.7 | 100 | 34 | 43 | 8.3 | 0.15 | 0.17 | 0.15 | 1.0 | 0.41 | 0.34 | 100.0 | 16.0 | 31.0 |
sec | 2003_11 | dssp | 1kom:A | 66.7 | 88 | 53 | 31 | 92 | 91 | 64 | 60.3 | 100 | 42 | 67 | 4.3 | 0.27 | 0.26 | 0.29 | 0.64 | 0.42 | 0.46 | 100.0 | 6.0 | 26.0 |
sec | 2003_11 | dssp | 1lmm:A | 65.0 | 0 | 0 | 0 | 0 | 83 | 83 | 50.1 | 100 | 0 | 64 | 10.0 | 0.06 | 0.07 | 0.07 | 1.0 | 1.0 | 0.28 | 100.0 | 22.0 | 22.0 |
sec | 2003_11 | dssp | 1mww:A | 70.0 | 62 | 100 | 60 | 87 | 91 | 48 | 74.8 | 80 | 74 | 67 | 0.0 | 0.42 | 0.41 | 0.44 | 0.70 | 0.64 | 0.47 | 0.0 | 15.0 | 9.0 |
sec | 2003_11 | dssp | 1n6j:G | 76.9 | 100 | 66 | 0 | 0 | 57 | 100 | 76.9 | 100 | 100 | 57 | 0.0 | 0.38 | 0.36 | 0.40 | 0.61 | 1.0 | 0.61 | 100.0 | 23.0 | 0.00 |
sec | 2003_11 | dssp | 1oa8:A | 60.9 | 8 | 25 | 58 | 91 | 88 | 52 | 48.3 | 12 | 66 | 46 | 2.3 | 0.23 | 0.20 | 0.27 | 0.04 | 0.60 | 0.36 | 100.0 | 12.0 | 14.0 |
sec | 2003_11 | dssp | 1oh1:A | 70.6 | 33 | 25 | 52 | 74 | 88 | 74 | 67.7 | 50 | 63 | 72 | 6.4 | 0.23 | 0.23 | 0.24 | 0.24 | 0.43 | 0.54 | 100.0 | 1.0 | 11.0 |
sec | 2003_11 | dssp | 1oqj:A | 67.8 | 56 | 56 | 37 | 64 | 90 | 73 | 64.7 | 48 | 45 | 83 | 12.2 | 0.23 | 0.22 | 0.25 | 0.41 | 0.36 | 0.61 | 100.0 | 0.00 | 11.0 |
sec | 2003_11 | dssp | 1p68:A | 75.5 | 71 | 88 | 0 | 0 | 82 | 60 | 68.4 | 62 | 100 | 82 | 0.0 | 0.21 | 0.22 | 0.21 | 0.51 | 1.0 | 0.51 | 100.0 | 12.0 | 0.00 |
sec | 2003_11 | dssp | 1pi7:A | 73.7 | 82 | 93 | 0 | 0 | 0 | 0 | 89.5 | 100 | 100 | 0 | 15.7 | 0.06 | 0.07 | 0.05 | 0.24 | 1.0 | 1.0 | 100.0 | 10.0 | 21.0 |
sec | 2003_11 | dssp | 1q68:A | 76.3 | 100 | 52 | 0 | 0 | 67 | 100 | 86.6 | 78 | 100 | 89 | 0.0 | 0.36 | 0.40 | 0.33 | 0.59 | 1.0 | 0.59 | 100.0 | 23.0 | 0.00 |
sec | 2003_11 | dssp | 1r5r:A | 79.5 | 80 | 93 | 0 | 0 | 82 | 67 | 89.4 | 99 | 0 | 76 | 0.8 | 0.36 | 0.39 | 0.34 | 0.67 | -0.02 | 0.59 | 100.0 | 9.0 | 1.0 |
sec | 2003_11 | dssp | 1rif:A | 70.2 | 72 | 77 | 72 | 63 | 66 | 67 | 72.5 | 78 | 70 | 68 | 3.9 | 0.26 | 0.27 | 0.27 | 0.59 | 0.58 | 0.45 | 0.0 | 2.0 | 2.0 |
sec | 2003_11 | dssp | 1ujl:A | 71.4 | 21 | 75 | 0 | 0 | 96 | 71 | 60.2 | 21 | 100 | 90 | 0.0 | 0.09 | 0.06 | 0.12 | 0.28 | 1.0 | 0.28 | 100.0 | 23.0 | 0.00 |
sec | 2003_11 | dssp | 1um3:E | 40.6 | 40 | 69 | 0 | 0 | 40 | 57 | 41.3 | 57 | 100 | 22 | 31.2 | 0.06 | 0.08 | 0.05 | 0.00 | 1.0 | 0.29 | 100.0 | 28.0 | 37.0 |
sec | 2003_11 | dssp | 1um3:F | 57.6 | 53 | 87 | 0 | 0 | 71 | 55 | 45.8 | 40 | 100 | 85 | 24.2 | 0.21 | 0.28 | 0.14 | 0.20 | 1.0 | 0.51 | 100.0 | 30.0 | 24.0 |
sec | 2003_11 | dssp | 1uqv:A | 83.5 | 73 | 97 | 0 | 0 | 97 | 72 | 90.9 | 89 | 100 | 92 | 0.0 | 0.43 | 0.44 | 0.43 | 0.70 | 1.0 | 0.70 | 0.0 | 14.0 | 0.00 |
sec | 2003_11 | dssp | THIS_month:psum | 68.6 | 55 | 62 | 19 | 33 | 74 | 65 | 66.3 | 71.4 | 70.2 | 64.8 | 7.0 | 0.24 | 0.24 | 0.23 | 0.49 | 0.73 | 0.50 | 82.3 | 14.4 | 12.2 |
sec | 2003_11 | dssp | ALL_proteins:psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
sec | 2003_11 | dssp | ALL_proteins:sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
sec | 2003_11 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |