METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp2 |
METHOD url: | APSSP2 |
TYPE : | sec |
NPROT : | 366 |
NWEEKS : | 78 |
NOTE 1 : | here ALL results obtained for APSSP2 in month 2003_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_11 | dssp | ALL_proteins:psum | 74.9 | 79 | 79 | 61 | 73 | 77 | 71 | 71.6 | 76.7 | 71.9 | 69.1 | 3.2 | 0.36 | 0.36 | 0.35 | 0.67 | 0.59 | 0.55 | 8606.5 | 7.6 | 6.6 |
sec | 2003_11 | dssp | ALL_proteins:sig | 11.8 | 31 | 32 | 37 | 43 | 14 | 15 | 16.7 | 24.8 | 27.4 | 17.9 | 5.3 | 0.17 | 0.17 | 0.17 | 0.24 | 0.28 | 0.18 | 8532.2 | 9.0 | 8.0 |
sec | 2003_11 | dssp | ALL_proteins:errsig | 0.61 | 1 | 1 | 1 | 2 | 0.77 | 0.78 | 0.87 | 1.2 | 1.4 | 0.93 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 445.9 | 0.47 | 0.41 |
sec | 2003_11 | dssp | THIS_month:psum | 74.2 | 65 | 68 | 33 | 41 | 73 | 72 | 73.5 | 78.1 | 79.4 | 67.8 | 4.1 | 0.32 | 0.33 | 0.30 | 0.59 | 0.73 | 0.53 | 80.9 | 11.5 | 7.0 |
sec | 2003_11 | dssp | 1kg1:A | 60.0 | 0 | 0 | 34 | 75 | 79 | 69 | 57.8 | 100 | 40 | 70 | 8.3 | 0.08 | 0.10 | 0.08 | 1.0 | 0.31 | 0.34 | 100.0 | 15.0 | 23.0 |
sec | 2003_11 | dssp | 1kom:A | 65.6 | 66 | 31 | 50 | 76 | 78 | 73 | 69.2 | 90 | 50 | 80 | 9.6 | 0.20 | 0.21 | 0.19 | 0.37 | 0.43 | 0.50 | 100.0 | 10.0 | 13.0 |
sec | 2003_11 | dssp | 1lmm:A | 62.5 | 0 | 0 | 33 | 100 | 70 | 95 | 59.6 | 100 | 44 | 62 | 12.5 | 0.30 | 0.38 | 0.23 | 1.0 | 0.52 | 0.50 | 100.0 | 35.0 | 15.0 |
sec | 2003_11 | dssp | 1mwq:A | 77.8 | 80 | 96 | 67 | 85 | 86 | 60 | 72.1 | 68 | 71 | 77 | 1.0 | 0.47 | 0.47 | 0.48 | 0.82 | 0.65 | 0.57 | 0.0 | 6.0 | 7.0 |
sec | 2003_11 | dssp | 1mww:A | 77.5 | 78 | 90 | 68 | 96 | 85 | 56 | 84.0 | 88 | 82 | 78 | 0.0 | 0.48 | 0.48 | 0.49 | 0.74 | 0.75 | 0.54 | 0.0 | 5.0 | 8.0 |
sec | 2003_11 | dssp | 1n6j:G | 76.9 | 100 | 66 | 0 | 0 | 57 | 100 | 76.9 | 100 | 100 | 57 | 0.0 | 0.38 | 0.36 | 0.40 | 0.61 | 1.0 | 0.61 | 100.0 | 23.0 | 0.00 |
sec | 2003_11 | dssp | 1oa8:A | 69.5 | 33 | 66 | 69 | 82 | 86 | 61 | 61.4 | 41 | 62 | 69 | 3.9 | 0.26 | 0.24 | 0.28 | 0.39 | 0.61 | 0.50 | 100.0 | 9.0 | 6.0 |
sec | 2003_11 | dssp | 1oh1:A | 72.5 | 0 | 0 | 79 | 63 | 74 | 84 | 74.1 | 0 | 79 | 77 | 6.4 | 0.23 | 0.22 | 0.25 | -0.03 | 0.47 | 0.58 | 0.0 | 3.0 | 10.0 |
sec | 2003_11 | dssp | 1oqj:A | 66.7 | 60 | 77 | 70 | 53 | 67 | 72 | 61.2 | 65 | 79 | 52 | 5.5 | 0.24 | 0.24 | 0.24 | 0.59 | 0.44 | 0.44 | 100.0 | 5.0 | 8.0 |
sec | 2003_11 | dssp | 1p68:A | 87.3 | 97 | 85 | 0 | 0 | 68 | 92 | 79.9 | 85 | 100 | 70 | 0.0 | 0.44 | 0.41 | 0.47 | 0.71 | 1.0 | 0.71 | 100.0 | 8.0 | 0.00 |
sec | 2003_11 | dssp | 1pi7:A | 73.7 | 82 | 93 | 0 | 0 | 0 | 0 | 89.5 | 100 | 100 | 0 | 5.2 | 0.15 | 0.21 | 0.11 | 0.24 | 1.0 | -0.11 | 100.0 | 10.0 | 10.0 |
sec | 2003_11 | dssp | 1px5:A | 77.8 | 77 | 90 | 69 | 65 | 82 | 70 | 72.3 | 73 | 86 | 66 | 3.0 | 0.37 | 0.37 | 0.37 | 0.70 | 0.61 | 0.60 | 100.0 | 7.0 | 0.00 |
sec | 2003_11 | dssp | 1q68:A | 71.1 | 90 | 47 | 0 | 0 | 64 | 94 | 60.0 | 82 | 100 | 55 | 0.0 | 0.20 | 0.22 | 0.18 | 0.47 | 1.0 | 0.47 | 100.0 | 23.0 | 0.00 |
sec | 2003_11 | dssp | 1r5r:A | 89.7 | 90 | 98 | 50 | 20 | 90 | 83 | 83.8 | 89 | 50 | 74 | 0.8 | 0.58 | 0.62 | 0.55 | 0.86 | 0.29 | 0.79 | 100.0 | 5.0 | 2.0 |
sec | 2003_11 | dssp | 1rif:A | 73.0 | 76 | 78 | 60 | 83 | 75 | 65 | 68.7 | 83 | 66 | 57 | 1.4 | 0.32 | 0.32 | 0.34 | 0.62 | 0.64 | 0.48 | 100.0 | 0.00 | 5.0 |
sec | 2003_11 | dssp | 1uf3:A | 73.7 | 80 | 84 | 55 | 81 | 83 | 64 | 69.5 | 88 | 60 | 62 | 1.7 | 0.36 | 0.36 | 0.38 | 0.75 | 0.56 | 0.52 | 100.0 | 1.0 | 10.0 |
sec | 2003_11 | dssp | 1ujl:A | 76.2 | 50 | 70 | 0 | 0 | 89 | 78 | 59.0 | 46 | 100 | 65 | 0.0 | 0.15 | 0.14 | 0.17 | 0.43 | 1.0 | 0.43 | 100.0 | 9.0 | 0.00 |
sec | 2003_11 | dssp | 1um3:E | 81.2 | 95 | 80 | 0 | 0 | 50 | 100 | 90.6 | 100 | 100 | 70 | 3.1 | 0.37 | 0.36 | 0.39 | 0.53 | 1.0 | 0.63 | 100.0 | 12.0 | 3.0 |
sec | 2003_11 | dssp | 1um3:F | 69.7 | 65 | 100 | 0 | 0 | 85 | 60 | 97.0 | 96 | 100 | 100 | 15.1 | 0.33 | 0.45 | 0.23 | 0.53 | 1.0 | 0.62 | 100.0 | 27.0 | 18.0 |
sec | 2003_11 | dssp | 1upt:B | 75.9 | 71 | 96 | 0 | 0 | 92 | 48 | 71.1 | 68 | 100 | 86 | 0.0 | 0.26 | 0.29 | 0.23 | 0.53 | 1.0 | 0.53 | 100.0 | 20.0 | 0.00 |
sec | 2003_11 | dssp | 1uqv:A | 81.2 | 75 | 90 | 0 | 0 | 88 | 91 | 87.1 | 79 | 100 | 97 | 10.5 | 0.51 | 0.60 | 0.43 | 0.63 | 1.0 | 0.83 | 0.0 | 9.0 | 10.0 |
sec | 2003_11 | dssp | THIS_month:psum | 74.2 | 65 | 68 | 33 | 41 | 73 | 72 | 73.5 | 78.1 | 79.4 | 67.8 | 4.1 | 0.32 | 0.33 | 0.30 | 0.59 | 0.73 | 0.53 | 80.9 | 11.5 | 7.0 |
sec | 2003_11 | dssp | ALL_proteins:psum | 74.9 | 79 | 79 | 61 | 73 | 77 | 71 | 71.6 | 76.7 | 71.9 | 69.1 | 3.2 | 0.36 | 0.36 | 0.35 | 0.67 | 0.59 | 0.55 | 8606.5 | 7.6 | 6.6 |
sec | 2003_11 | dssp | ALL_proteins:sig | 11.8 | 31 | 32 | 37 | 43 | 14 | 15 | 16.7 | 24.8 | 27.4 | 17.9 | 5.3 | 0.17 | 0.17 | 0.17 | 0.24 | 0.28 | 0.18 | 8532.2 | 9.0 | 8.0 |
sec | 2003_11 | dssp | ALL_proteins:errsig | 0.61 | 1 | 1 | 1 | 2 | 0.77 | 0.78 | 0.87 | 1.2 | 1.4 | 0.93 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 445.9 | 0.47 | 0.41 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |