This index is provided with the sole
purpose of pointing to a page where you can find more
information about the subject. You might have to read a good
part of the page to actually find the information, and I do
apologise. In any case, the best way to learn how to use
Swiss-PdbViewer is to take the time to do the tutorials.
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
A 
Adding Residues
B
B-factor
Backbone (colour)
Backbone (angles)
Building Loops
Building Residues
C
Changing the chain name for some
aa
Changing the size of the slab
Changing Phi/Psi angles for an amino-acid
Control Panel
Clearing user labels (distances,
angles...)
Colours
Comparing two proteins
Crystallographic Symmetries
(building)
D
Deleting residues
Detecting Secondary Structures
Discarding molecule(s)
Display Menu
Distortions (identifying)
Downlaoding
E
Electron Density Maps
Electrostatic potentials
Energy Minimisation
Energy (Threading)
F
Feedback, Questions
Files
Fitting Molecules
Fitting (Residues into electron
density)
Force Fields
G
Gromos
H
H-bonds
Homology Modelling
I J
K
Identifying distorted parts of the
protein
Image Gallery
L
Local Coordinates
Labels
Loading Protein
Loops (Building)
M
Measuring Distances, Angles,
Torsions
Mean Force Potential (used
during threading)
Menus
Merging several files
Modelling Proteins
Moving a molecule independently of
others
Moving a subpart of the molecule
only
Moving the slab along the Z axis
Mutations
N O
P
Phi/Psi (changing)
Phi/Psi (viewing)
Pov-Ray
Preferences
PROSITE Pattern
Q R
Ramachandran Plots
Ray tracing
References
Rendering Quality (comparison)
Renumbering Amino-acids
Ribbon representations
RMS deviation
Rotate the molecule around a
specific axis (X or Y or Z)
S
Saving a structural alignment
Saving an image
Saving only a part of a file
Scripting Language
Secondary Structures
Selecting Residues (general
considerations)
Select (menu)
Slab
Structural Alignments
Stereo view
Superposing Proteins
Symmetries (crystallographic)
Symmetries
(non-crystallographic)
T U
Threading Energy
Tips & Tricks
Tools (accessible from main
window)
Tools (menu)
Torsions tools.
Tutorial
(basic manipulation)
Tutorial (advanced examples)
V W
X Y
Z
Viewing only the interior of the protein (slab
mode)
Wine: Running windows binaries under Linux
World Coordinates
[last modified: 16 Jan. 2001 by T.S.]
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