METHOD about: | ../../doc/explain_methods.html#PX_about_sable |
METHOD url: | SABLE |
METHOD quote: | A Porollo, R Adamczak, M Wagner, and J Meller:: Maximum Feasibility Approach for Consensus Classifiers: Applications to Protein Structure Prediction. CIRAS, 2003 (conference proceedings) |
TYPE : | sec |
NPROT : | 87 |
NWEEKS : | 23 |
AVE_Q3 : | 75.8 |
AVE_SOV: | 75.5 |
NOTE 1 : | here ALL results obtained for sable are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_04_28 | dssp | psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2004_04_28 | dssp | sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2004_04_28 | dssp | errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
---|---|---|---|---|---|
sec | sable | ALL | 87 | 75.8 | |
sec | sable | 2003_07 | 7 | 82.6 | old/2003_07_sable.html |
sec | sable | 2003_08 | 5 | 77.6 | old/2003_08_sable.html |
sec | sable | 2003_11 | 15 | 75.1 | old/2003_11_sable.html |
sec | sable | 2003_12 | 19 | 78.0 | old/2003_12_sable.html |
sec | sable | 2004_01 | 12 | 68.0 | old/2004_01_sable.html |
sec | sable | 2004_02 | 19 | 75.1 | old/2004_02_sable.html |
sec | sable | 2004_03 | 13 | 76.4 | old/2004_03_sable.html |
sec | sable | 2004_04 | 4 | 79.0 | old/2004_04_sable.html |
sec | sable | ALL | 87 | 75.8 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |