METHOD about: | ../../../doc/explain_methods.html#PX_about_sable |
METHOD url: | SABLE |
TYPE : | sec |
NPROT : | 87 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for SABLE in month 2004_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_01 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2004_01 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
sec | 2004_01 | dssp | THIS_month:psum | 67.9 | 69 | 72 | 51 | 44 | 69 | 68 | 66.5 | 73.9 | 45 | 61.6 | 6.3 | 0.26 | 0.26 | 0.26 | 0.52 | 0.45 | 0.46 | 72.7 | 8.2 | 6.6 |
sec | 2004_01 | dssp | 1m36:A | 54.5 | 80 | 50 | 50 | 28 | 42 | 80 | 66.2 | 100 | 37 | 54 | 6.0 | 0.18 | 0.20 | 0.18 | 0.41 | 0.26 | 0.29 | 100.0 | 18.0 | 9.0 |
sec | 2004_01 | dssp | 1nnv:A | 59.8 | 54 | 36 | 65 | 50 | 60 | 87 | 49.3 | 62 | 69 | 41 | 13.0 | 0.17 | 0.18 | 0.17 | 0.23 | 0.43 | 0.50 | 0.0 | 11.0 | 6.0 |
sec | 2004_01 | dssp | 1p57:A | 58.2 | 31 | 24 | 50 | 67 | 76 | 71 | 60.7 | 22 | 53 | 82 | 17.2 | 0.16 | 0.17 | 0.17 | 0.06 | 0.40 | 0.50 | 100.0 | 6.0 | 9.0 |
sec | 2004_01 | dssp | 1p94:A | 60.5 | 48 | 85 | 71 | 26 | 71 | 63 | 52.3 | 47 | 49 | 56 | 10.5 | 0.16 | 0.18 | 0.16 | 0.45 | 0.34 | 0.41 | 100.0 | 21.0 | 15.0 |
sec | 2004_01 | dssp | 1pc6:A | 75.9 | 80 | 90 | 72 | 61 | 70 | 65 | 75.7 | 80 | 71 | 68 | 1.4 | 0.37 | 0.38 | 0.37 | 0.72 | 0.60 | 0.50 | 100.0 | 5.0 | 2.0 |
sec | 2004_01 | dssp | 1q7l:B | 70.5 | 65 | 81 | 50 | 46 | 82 | 69 | 61.6 | 59 | 54 | 65 | 7.9 | 0.23 | 0.24 | 0.24 | 0.54 | 0.39 | 0.57 | 100.0 | 9.0 | 1.0 |
sec | 2004_01 | dssp | 1r2m:A | 62.9 | 90 | 90 | 32 | 60 | 81 | 57 | 64.7 | 100 | 42 | 73 | 1.4 | 0.33 | 0.32 | 0.36 | 0.88 | 0.21 | 0.32 | 100.0 | 0.00 | 18.0 |
sec | 2004_01 | dssp | 1rh5:B | 85.7 | 93 | 93 | 0 | 0 | 57 | 44 | 88.7 | 100 | 0 | 37 | 0.0 | 0.32 | 0.30 | 0.35 | 0.60 | 1.0 | 0.42 | 100.0 | 0.00 | 3.0 |
sec | 2004_01 | dssp | 1rhz:A | 79.9 | 91 | 81 | 76 | 43 | 60 | 83 | 84.6 | 96 | 53 | 67 | 1.6 | 0.31 | 0.31 | 0.32 | 0.61 | 0.56 | 0.58 | 0.0 | 7.0 | 2.0 |
sec | 2004_01 | dssp | 1rpu:A | 61.6 | 58 | 68 | 38 | 54 | 80 | 59 | 55.7 | 65 | 27 | 64 | 10.8 | 0.16 | 0.16 | 0.17 | 0.43 | 0.31 | 0.46 | 0.0 | 5.0 | 7.0 |
sec | 2004_01 | dssp | 1uhw:A | 78.0 | 73 | 96 | 61 | 53 | 85 | 74 | 72.1 | 82 | 40 | 71 | 0.0 | 0.43 | 0.43 | 0.43 | 0.76 | 0.51 | 0.56 | 100.0 | 9.0 | 1.0 |
sec | 2004_01 | dssp | THIS_month:psum | 67.9 | 69 | 72 | 51 | 44 | 69 | 68 | 66.5 | 73.9 | 45 | 61.6 | 6.3 | 0.26 | 0.26 | 0.26 | 0.52 | 0.45 | 0.46 | 72.7 | 8.2 | 6.6 |
sec | 2004_01 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2004_01 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |