METHOD about: | ../../../doc/explain_methods.html#PX_about_sable |
METHOD url: | SABLE |
TYPE : | sec |
NPROT : | 87 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for SABLE in month 2004_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_04 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2004_04 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2004_04 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
sec | 2004_04 | dssp | THIS_month:psum | 79.0 | 66 | 67 | 53 | 53 | 76 | 84 | 72.4 | 96.2 | 81.7 | 62.2 | 1.2 | 0.44 | 0.47 | 0.42 | 0.86 | 0.69 | 0.59 | 100 | 4.5 | 9.7 |
sec | 2004_04 | dssp | 1nei:A | 81.7 | 75 | 100 | 91 | 57 | 82 | 88 | 80.8 | 85 | 100 | 72 | 5.0 | 0.52 | 0.53 | 0.52 | 0.81 | 0.64 | 0.73 | 100.0 | 8.0 | 11.0 |
sec | 2004_04 | dssp | 1pv0:A | 84.8 | 100 | 93 | 0 | 0 | 63 | 100 | 70.2 | 100 | 100 | 43 | 0.0 | 0.67 | 0.77 | 0.59 | 0.91 | 1.0 | 0.70 | 100.0 | 4.0 | 10.0 |
sec | 2004_04 | dssp | 1rk8:C | 69.7 | 0 | 0 | 38 | 71 | 90 | 69 | 53.7 | 100 | 42 | 61 | 0.0 | 0.09 | 0.09 | 0.11 | 1.0 | 0.34 | 0.34 | 100.0 | 0.00 | 18.0 |
sec | 2004_04 | dssp | 1rli:A | 80.0 | 90 | 75 | 85 | 85 | 69 | 81 | 85.0 | 100 | 85 | 73 | 0.0 | 0.49 | 0.49 | 0.49 | 0.72 | 0.81 | 0.59 | 100.0 | 6.0 | 0.00 |
sec | 2004_04 | dssp | THIS_month:psum | 79.0 | 66 | 67 | 53 | 53 | 76 | 84 | 72.4 | 96.2 | 81.7 | 62.2 | 1.2 | 0.44 | 0.47 | 0.42 | 0.86 | 0.69 | 0.59 | 100 | 4.5 | 9.7 |
sec | 2004_04 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2004_04 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2004_04 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |