METHOD about: | ../../../doc/explain_methods.html#PX_about_yaspin |
METHOD url: | yaspin |
TYPE : | sec |
NPROT : | 40 |
NWEEKS : | 10 |
NOTE 1 : | here ALL results obtained for yaspin in month 2004_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_03 | dssp | ALL_proteins:psum | 66.5 | 62 | 86 | 73 | 48 | 75 | 70 | 67.2 | 68.4 | 79.7 | 70.3 | 11.6 | 0.37 | 0.38 | 0.35 | 0.58 | 0.48 | 0.54 | 8500.0 | 18.0 | 14.1 |
sec | 2004_03 | dssp | ALL_proteins:sig | 20.3 | 35 | 40 | 53 | 38 | 16 | 18 | 21.1 | 33.8 | 26.6 | 19.2 | 18.5 | 0.21 | 0.21 | 0.21 | 0.32 | 0.40 | 0.22 | 8522.2 | 21.6 | 19.5 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 3.2 | 5 | 6 | 8 | 6 | 2 | 2 | 3.3 | 5.3 | 4.2 | 3.0 | 2.9 | 0.03 | 0.03 | 0.03 | 0.05 | 0.06 | 0.03 | 1347.4 | 3.4 | 3.0 |
sec | 2004_03 | dssp | THIS_month:psum | 71.0 | 61 | 78 | 37 | 32 | 79 | 74 | 70.0 | 75.0 | 69 | 72.5 | 7.9 | 0.38 | 0.40 | 0.37 | 0.62 | 0.60 | 0.56 | 83.3 | 12.5 | 9.9 |
sec | 2004_03 | dssp | 1nng:A | 86.5 | 87 | 90 | 90 | 87 | 81 | 83 | 84.0 | 90 | 88 | 75 | 0.0 | 0.59 | 0.59 | 0.60 | 0.86 | 0.82 | 0.71 | 100.0 | 0.00 | 1.0 |
sec | 2004_03 | dssp | 1oyi:A | 80.6 | 90 | 87 | 71 | 50 | 69 | 84 | 87.1 | 100 | 50 | 80 | 3.2 | 0.48 | 0.49 | 0.47 | 0.77 | 0.53 | 0.64 | 100.0 | 1.0 | 4.0 |
sec | 2004_03 | dssp | 1pgy:A | 73.9 | 72 | 88 | 0 | 0 | 76 | 52 | 89.1 | 93 | 100 | 76 | 0.0 | 0.16 | 0.18 | 0.15 | 0.45 | 1.0 | 0.45 | 100.0 | 13.0 | 0.00 |
sec | 2004_03 | dssp | 1pjv:A | 38.7 | 44 | 80 | 0 | 0 | 66 | 40 | 27.3 | 60 | 0 | 25 | 9.6 | 0.27 | 0.24 | 0.30 | 0.49 | -0.33 | 0.03 | 100.0 | 12.0 | 12.0 |
sec | 2004_03 | dssp | 1qw2:A | 79.2 | 72 | 75 | 83 | 83 | 80 | 78 | 80.5 | 68 | 83 | 84 | 1.9 | 0.43 | 0.43 | 0.43 | 0.65 | 0.76 | 0.62 | 100.0 | 0.00 | 0.00 |
sec | 2004_03 | dssp | 1r4g:A | 76.9 | 75 | 90 | 0 | 0 | 81 | 81 | 80.6 | 77 | 100 | 86 | 11.5 | 0.37 | 0.46 | 0.30 | 0.52 | 1.0 | 0.72 | 100.0 | 11.0 | 11.0 |
sec | 2004_03 | dssp | 1rkl:A | 34.3 | 8 | 50 | 0 | 0 | 83 | 76 | 41.9 | 16 | 100 | 91 | 51.4 | 0.47 | 0.56 | 0.38 | -0.11 | 1.0 | 0.69 | 100.0 | 54.0 | 51.0 |
sec | 2004_03 | dssp | 1rqt:A | 88.9 | 100 | 84 | 0 | 0 | 71 | 100 | 69.4 | 68 | 100 | 71 | 0.0 | 0.57 | 0.54 | 0.61 | 0.77 | 1.0 | 0.77 | 100.0 | 11.0 | 0.00 |
sec | 2004_03 | dssp | 1s4z:C | 72.4 | 0 | 0 | 66 | 22 | 73 | 95 | 63.3 | 100 | 60 | 63 | 0.0 | 0.07 | 0.09 | 0.05 | 1.0 | 0.26 | 0.26 | 100.0 | 0.00 | 20.0 |
sec | 2004_03 | dssp | 1v74:A | 74.5 | 56 | 100 | 66 | 63 | 93 | 69 | 67.3 | 71 | 57 | 69 | 4.7 | 0.38 | 0.37 | 0.40 | 0.67 | 0.56 | 0.62 | 100.0 | 16.0 | 0.00 |
sec | 2004_03 | dssp | 1v74:B | 61.6 | 51 | 96 | 0 | 0 | 83 | 59 | 63.4 | 58 | 0 | 79 | 12.7 | 0.22 | 0.26 | 0.19 | 0.49 | -0.07 | 0.50 | 0.0 | 29.0 | 15.0 |
sec | 2004_03 | dssp | 1vjq:A | 84.9 | 87 | 100 | 71 | 88 | 92 | 74 | 86.7 | 100 | 90 | 72 | 0.0 | 0.61 | 0.60 | 0.62 | 0.90 | 0.72 | 0.70 | 0.0 | 4.0 | 5.0 |
sec | 2004_03 | dssp | THIS_month:psum | 71.0 | 61 | 78 | 37 | 32 | 79 | 74 | 70.0 | 75.0 | 69 | 72.5 | 7.9 | 0.38 | 0.40 | 0.37 | 0.62 | 0.60 | 0.56 | 83.3 | 12.5 | 9.9 |
sec | 2004_03 | dssp | ALL_proteins:psum | 66.5 | 62 | 86 | 73 | 48 | 75 | 70 | 67.2 | 68.4 | 79.7 | 70.3 | 11.6 | 0.37 | 0.38 | 0.35 | 0.58 | 0.48 | 0.54 | 8500.0 | 18.0 | 14.1 |
sec | 2004_03 | dssp | ALL_proteins:sig | 20.3 | 35 | 40 | 53 | 38 | 16 | 18 | 21.1 | 33.8 | 26.6 | 19.2 | 18.5 | 0.21 | 0.21 | 0.21 | 0.32 | 0.40 | 0.22 | 8522.2 | 21.6 | 19.5 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 3.2 | 5 | 6 | 8 | 6 | 2 | 2 | 3.3 | 5.3 | 4.2 | 3.0 | 2.9 | 0.03 | 0.03 | 0.03 | 0.05 | 0.06 | 0.03 | 1347.4 | 3.4 | 3.0 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |