METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro4 |
METHOD url: | SSpro4 |
TYPE : | sec |
NPROT : | 19 |
NWEEKS : | 6 |
NOTE 1 : | here ALL results obtained for SSpro4 in month 2004_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_03 | dssp | ALL_proteins:psum | 78.0 | 84 | 84 | 72 | 65 | 74 | 77 | 73.6 | 82.5 | 78.1 | 69.1 | 2.5 | 0.42 | 0.43 | 0.42 | 0.72 | 0.63 | 0.60 | 8947.3 | 7.9 | 5.1 |
sec | 2004_03 | dssp | ALL_proteins:sig | 14.4 | 36 | 35 | 53 | 51 | 16 | 15 | 20.1 | 24.9 | 30.7 | 19.6 | 5.0 | 0.21 | 0.22 | 0.21 | 0.29 | 0.38 | 0.22 | 9100.6 | 5.7 | 6.8 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 3.3 | 8 | 8 | 12 | 11 | 3 | 3 | 4.6 | 5.7 | 7.0 | 4.5 | 1.1 | 0.04 | 0.05 | 0.04 | 0.06 | 0.08 | 0.05 | 2087.8 | 1.3 | 1.5 |
sec | 2004_03 | dssp | THIS_month:psum | 75.2 | 72 | 71 | 38 | 32 | 73 | 80 | 72.1 | 77.3 | 70.3 | 72 | 4.0 | 0.41 | 0.41 | 0.41 | 0.66 | 0.60 | 0.57 | 83.3 | 9.9 | 4.9 |
sec | 2004_03 | dssp | 1nng:A | 90.1 | 87 | 90 | 92 | 94 | 88 | 85 | 87.1 | 90 | 93 | 78 | 0.0 | 0.67 | 0.67 | 0.67 | 0.86 | 0.89 | 0.79 | 100.0 | 0.00 | 0.00 |
sec | 2004_03 | dssp | 1oyi:A | 71.0 | 96 | 73 | 42 | 42 | 43 | 76 | 59.9 | 71 | 40 | 50 | 3.2 | 0.29 | 0.27 | 0.31 | 0.64 | 0.35 | 0.42 | 100.0 | 16.0 | 0.00 |
sec | 2004_03 | dssp | 1pgy:A | 91.5 | 93 | 93 | 0 | 0 | 85 | 85 | 97.4 | 100 | 100 | 91 | 0.0 | 0.53 | 0.54 | 0.54 | 0.79 | 1.0 | 0.79 | 100.0 | 0.00 | 0.00 |
sec | 2004_03 | dssp | 1pjv:A | 31.2 | 0 | 0 | 0 | 0 | 76 | 43 | 15.7 | 0 | 0 | 38 | 18.7 | 0.20 | 0.17 | 0.24 | -0.20 | -0.32 | 0.09 | 100.0 | 18.0 | 12.0 |
sec | 2004_03 | dssp | 1qw2:A | 81.4 | 92 | 71 | 87 | 79 | 71 | 91 | 82.6 | 92 | 81 | 78 | 2.9 | 0.49 | 0.50 | 0.49 | 0.74 | 0.75 | 0.69 | 0.0 | 6.0 | 2.0 |
sec | 2004_03 | dssp | 1r4g:A | 77.4 | 75 | 90 | 0 | 0 | 82 | 82 | 81.9 | 77 | 100 | 90 | 11.3 | 0.39 | 0.47 | 0.31 | 0.54 | 1.0 | 0.74 | 100.0 | 11.0 | 11.0 |
sec | 2004_03 | dssp | 1rkl:A | 91.7 | 100 | 88 | 0 | 0 | 76 | 100 | 97.2 | 100 | 100 | 92 | 0.0 | 0.63 | 0.60 | 0.67 | 0.82 | 1.0 | 0.82 | 100.0 | 8.0 | 0.00 |
sec | 2004_03 | dssp | 1rqt:A | 86.5 | 100 | 81 | 0 | 0 | 66 | 100 | 62.2 | 68 | 100 | 56 | 0.0 | 0.52 | 0.48 | 0.56 | 0.73 | 1.0 | 0.73 | 100.0 | 13.0 | 0.00 |
sec | 2004_03 | dssp | 1s4z:C | 60.0 | 0 | 0 | 66 | 22 | 59 | 94 | 59.5 | 100 | 60 | 59 | 0.0 | 0.08 | 0.12 | 0.04 | 1.0 | 0.26 | 0.15 | 100.0 | 13.0 | 20.0 |
sec | 2004_03 | dssp | 1v74:A | 70.1 | 58 | 100 | 52 | 50 | 87 | 66 | 71.9 | 74 | 55 | 77 | 4.6 | 0.32 | 0.31 | 0.34 | 0.69 | 0.38 | 0.52 | 100.0 | 14.0 | 0.00 |
sec | 2004_03 | dssp | 1v74:B | 69.0 | 66 | 87 | 50 | 9 | 74 | 65 | 61.4 | 56 | 25 | 78 | 8.0 | 0.19 | 0.22 | 0.17 | 0.50 | 0.17 | 0.51 | 0.0 | 14.0 | 10.0 |
sec | 2004_03 | dssp | 1vjq:A | 83.6 | 100 | 82 | 76 | 88 | 75 | 80 | 88.8 | 100 | 90 | 77 | 0.0 | 0.59 | 0.59 | 0.60 | 0.86 | 0.75 | 0.64 | 100.0 | 6.0 | 4.0 |
sec | 2004_03 | dssp | THIS_month:psum | 75.2 | 72 | 71 | 38 | 32 | 73 | 80 | 72.1 | 77.3 | 70.3 | 72 | 4.0 | 0.41 | 0.41 | 0.41 | 0.66 | 0.60 | 0.57 | 83.3 | 9.9 | 4.9 |
sec | 2004_03 | dssp | ALL_proteins:psum | 78.0 | 84 | 84 | 72 | 65 | 74 | 77 | 73.6 | 82.5 | 78.1 | 69.1 | 2.5 | 0.42 | 0.43 | 0.42 | 0.72 | 0.63 | 0.60 | 8947.3 | 7.9 | 5.1 |
sec | 2004_03 | dssp | ALL_proteins:sig | 14.4 | 36 | 35 | 53 | 51 | 16 | 15 | 20.1 | 24.9 | 30.7 | 19.6 | 5.0 | 0.21 | 0.22 | 0.21 | 0.29 | 0.38 | 0.22 | 9100.6 | 5.7 | 6.8 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 3.3 | 8 | 8 | 12 | 11 | 3 | 3 | 4.6 | 5.7 | 7.0 | 4.5 | 1.1 | 0.04 | 0.05 | 0.04 | 0.06 | 0.08 | 0.05 | 2087.8 | 1.3 | 1.5 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |