METHOD about: | ../../../doc/explain_methods.html#PX_about_scratch |
METHOD url: | SCRATCH (SSpro3) |
TYPE : | sec |
NPROT : | 168 |
NWEEKS : | 42 |
NOTE 1 : | here ALL results obtained for SCRATCH (SSpro3) in month 2004_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_03 | dssp | ALL_proteins:psum | 75.5 | 81 | 82 | 65 | 72 | 78 | 73 | 72.0 | 77.9 | 73.8 | 67.9 | 3.3 | 0.36 | 0.36 | 0.35 | 0.70 | 0.61 | 0.58 | 8273.8 | 7.7 | 6.3 |
sec | 2004_03 | dssp | ALL_proteins:sig | 11.3 | 35 | 34 | 41 | 46 | 15 | 15 | 16.2 | 26.3 | 27.7 | 17.3 | 6.5 | 0.16 | 0.17 | 0.16 | 0.26 | 0.30 | 0.20 | 8215.6 | 8.5 | 7.9 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 3 | 3 | 1 | 1 | 1.2 | 2.0 | 2.1 | 1.3 | 0.50 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 633.8 | 0.66 | 0.61 |
sec | 2004_03 | dssp | THIS_month:psum | 75.4 | 72 | 72 | 39 | 31 | 74 | 81 | 70.7 | 75.7 | 68.2 | 70.3 | 4.2 | 0.41 | 0.41 | 0.41 | 0.67 | 0.60 | 0.58 | 83.3 | 9.6 | 5.3 |
sec | 2004_03 | dssp | 1nng:A | 89.4 | 84 | 96 | 92 | 90 | 88 | 84 | 81.7 | 90 | 93 | 66 | 0.0 | 0.66 | 0.66 | 0.67 | 0.87 | 0.86 | 0.77 | 100.0 | 2.0 | 0.00 |
sec | 2004_03 | dssp | 1oyi:A | 72.6 | 96 | 75 | 42 | 42 | 47 | 78 | 61.8 | 72 | 40 | 53 | 3.2 | 0.31 | 0.29 | 0.33 | 0.67 | 0.35 | 0.46 | 100.0 | 14.0 | 0.00 |
sec | 2004_03 | dssp | 1pgy:A | 87.2 | 90 | 90 | 0 | 0 | 78 | 78 | 96.2 | 100 | 100 | 87 | 0.0 | 0.39 | 0.39 | 0.39 | 0.69 | 1.0 | 0.69 | 100.0 | 0.00 | 0.00 |
sec | 2004_03 | dssp | 1pjv:A | 31.2 | 0 | 0 | 0 | 0 | 76 | 43 | 15.7 | 0 | 0 | 38 | 18.7 | 0.20 | 0.17 | 0.24 | -0.20 | -0.32 | 0.09 | 100.0 | 18.0 | 12.0 |
sec | 2004_03 | dssp | 1qw2:A | 81.4 | 100 | 71 | 87 | 75 | 67 | 100 | 78.8 | 74 | 79 | 80 | 3.9 | 0.55 | 0.56 | 0.54 | 0.78 | 0.71 | 0.72 | 0.0 | 9.0 | 4.0 |
sec | 2004_03 | dssp | 1r4g:A | 77.4 | 75 | 90 | 0 | 0 | 82 | 82 | 81.9 | 77 | 100 | 90 | 11.3 | 0.39 | 0.47 | 0.31 | 0.54 | 1.0 | 0.74 | 100.0 | 11.0 | 11.0 |
sec | 2004_03 | dssp | 1rkl:A | 94.4 | 100 | 92 | 0 | 0 | 84 | 100 | 97.2 | 100 | 100 | 92 | 0.0 | 0.72 | 0.70 | 0.75 | 0.88 | 1.0 | 0.88 | 100.0 | 5.0 | 0.00 |
sec | 2004_03 | dssp | 1rqt:A | 86.5 | 100 | 81 | 0 | 0 | 66 | 100 | 62.2 | 68 | 100 | 56 | 0.0 | 0.52 | 0.48 | 0.56 | 0.73 | 1.0 | 0.73 | 100.0 | 13.0 | 0.00 |
sec | 2004_03 | dssp | 1s4z:C | 60.0 | 0 | 0 | 66 | 22 | 59 | 94 | 59.5 | 100 | 60 | 59 | 0.0 | 0.08 | 0.12 | 0.04 | 1.0 | 0.26 | 0.15 | 100.0 | 13.0 | 20.0 |
sec | 2004_03 | dssp | 1v74:A | 70.1 | 61 | 100 | 52 | 47 | 85 | 66 | 66.6 | 74 | 41 | 74 | 4.6 | 0.33 | 0.32 | 0.34 | 0.71 | 0.37 | 0.51 | 100.0 | 14.0 | 1.0 |
sec | 2004_03 | dssp | 1v74:B | 66.7 | 64 | 87 | 50 | 7 | 70 | 64 | 59.0 | 54 | 16 | 72 | 9.1 | 0.18 | 0.21 | 0.15 | 0.48 | 0.15 | 0.48 | 0.0 | 16.0 | 12.0 |
sec | 2004_03 | dssp | 1vjq:A | 89.0 | 95 | 92 | 80 | 94 | 89 | 83 | 88.5 | 100 | 90 | 77 | 0.0 | 0.66 | 0.66 | 0.67 | 0.90 | 0.83 | 0.77 | 100.0 | 1.0 | 4.0 |
sec | 2004_03 | dssp | THIS_month:psum | 75.4 | 72 | 72 | 39 | 31 | 74 | 81 | 70.7 | 75.7 | 68.2 | 70.3 | 4.2 | 0.41 | 0.41 | 0.41 | 0.67 | 0.60 | 0.58 | 83.3 | 9.6 | 5.3 |
sec | 2004_03 | dssp | ALL_proteins:psum | 75.5 | 81 | 82 | 65 | 72 | 78 | 73 | 72.0 | 77.9 | 73.8 | 67.9 | 3.3 | 0.36 | 0.36 | 0.35 | 0.70 | 0.61 | 0.58 | 8273.8 | 7.7 | 6.3 |
sec | 2004_03 | dssp | ALL_proteins:sig | 11.3 | 35 | 34 | 41 | 46 | 15 | 15 | 16.2 | 26.3 | 27.7 | 17.3 | 6.5 | 0.16 | 0.17 | 0.16 | 0.26 | 0.30 | 0.20 | 8215.6 | 8.5 | 7.9 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 3 | 3 | 1 | 1 | 1.2 | 2.0 | 2.1 | 1.3 | 0.50 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 633.8 | 0.66 | 0.61 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |