METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 329 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2004_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_03 | dssp | ALL_proteins:psum | 75.4 | 84 | 78 | 63 | 74 | 74 | 73 | 71.4 | 76.7 | 73.0 | 66.6 | 2.7 | 0.35 | 0.36 | 0.35 | 0.69 | 0.61 | 0.54 | 8632.2 | 7.3 | 6.4 |
sec | 2004_03 | dssp | ALL_proteins:sig | 10.7 | 34 | 32 | 38 | 44 | 17 | 15 | 15.5 | 26.1 | 27.4 | 18.7 | 4.8 | 0.17 | 0.17 | 0.17 | 0.25 | 0.28 | 0.19 | 8558.9 | 7.7 | 7.1 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 0.59 | 1 | 1 | 2 | 2 | 0.97 | 0.84 | 0.85 | 1.4 | 1.5 | 1.0 | 0.26 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 471.8 | 0.42 | 0.39 |
sec | 2004_03 | dssp | THIS_month:psum | 77.6 | 74 | 71 | 37 | 36 | 75 | 82 | 78.0 | 81.9 | 72.8 | 77.4 | 3.0 | 0.41 | 0.42 | 0.41 | 0.77 | 0.63 | 0.60 | 83.3 | 8.7 | 3.5 |
sec | 2004_03 | dssp | 1nng:A | 89.4 | 87 | 93 | 90 | 92 | 88 | 84 | 89.0 | 93 | 93 | 81 | 0.0 | 0.65 | 0.65 | 0.66 | 0.87 | 0.86 | 0.77 | 100.0 | 1.0 | 0.00 |
sec | 2004_03 | dssp | 1oyi:A | 83.9 | 96 | 86 | 57 | 66 | 73 | 85 | 90.7 | 100 | 60 | 87 | 1.6 | 0.48 | 0.47 | 0.50 | 0.81 | 0.57 | 0.68 | 100.0 | 6.0 | 1.0 |
sec | 2004_03 | dssp | 1pgy:A | 87.2 | 93 | 88 | 0 | 0 | 71 | 83 | 97.4 | 100 | 100 | 91 | 0.0 | 0.39 | 0.38 | 0.40 | 0.68 | 1.0 | 0.68 | 100.0 | 4.0 | 0.00 |
sec | 2004_03 | dssp | 1pjv:A | 37.5 | 0 | 0 | 20 | 25 | 76 | 41 | 24.5 | 0 | 30 | 37 | 9.3 | 0.00 | 0.01 | 0.01 | 1.0 | -0.07 | 0.03 | 100.0 | 28.0 | 6.0 |
sec | 2004_03 | dssp | 1qw2:A | 84.3 | 100 | 71 | 83 | 86 | 76 | 94 | 89.9 | 92 | 87 | 90 | 2.9 | 0.56 | 0.57 | 0.56 | 0.78 | 0.78 | 0.75 | 0.0 | 9.0 | 0.00 |
sec | 2004_03 | dssp | 1r4g:A | 83.0 | 83 | 90 | 0 | 0 | 82 | 93 | 90.6 | 88 | 100 | 94 | 9.4 | 0.50 | 0.59 | 0.42 | 0.63 | 1.0 | 0.82 | 100.0 | 5.0 | 9.0 |
sec | 2004_03 | dssp | 1rkl:A | 91.7 | 100 | 88 | 0 | 0 | 76 | 100 | 97.2 | 100 | 100 | 92 | 0.0 | 0.63 | 0.60 | 0.67 | 0.82 | 1.0 | 0.82 | 100.0 | 8.0 | 0.00 |
sec | 2004_03 | dssp | 1rqt:A | 86.5 | 100 | 81 | 0 | 0 | 66 | 100 | 68.8 | 65 | 100 | 73 | 0.0 | 0.52 | 0.48 | 0.56 | 0.73 | 1.0 | 0.73 | 100.0 | 13.0 | 0.00 |
sec | 2004_03 | dssp | 1s4z:C | 60.0 | 0 | 0 | 66 | 25 | 59 | 94 | 59.2 | 100 | 60 | 59 | 0.0 | 0.09 | 0.15 | 0.05 | 1.0 | 0.30 | 0.15 | 100.0 | 16.0 | 16.0 |
sec | 2004_03 | dssp | 1v74:A | 71.0 | 61 | 82 | 61 | 56 | 82 | 70 | 72.0 | 74 | 54 | 80 | 6.5 | 0.26 | 0.26 | 0.26 | 0.58 | 0.48 | 0.55 | 100.0 | 9.0 | 1.0 |
sec | 2004_03 | dssp | 1v74:B | 71.3 | 74 | 81 | 0 | 0 | 70 | 68 | 69.8 | 71 | 0 | 70 | 6.8 | 0.24 | 0.26 | 0.22 | 0.45 | -0.04 | 0.52 | 0.0 | 5.0 | 4.0 |
sec | 2004_03 | dssp | 1vjq:A | 86.3 | 95 | 92 | 71 | 93 | 89 | 78 | 87.7 | 100 | 90 | 75 | 0.0 | 0.62 | 0.62 | 0.64 | 0.90 | 0.76 | 0.72 | 100.0 | 1.0 | 6.0 |
sec | 2004_03 | dssp | THIS_month:psum | 77.6 | 74 | 71 | 37 | 36 | 75 | 82 | 78.0 | 81.9 | 72.8 | 77.4 | 3.0 | 0.41 | 0.42 | 0.41 | 0.77 | 0.63 | 0.60 | 83.3 | 8.7 | 3.5 |
sec | 2004_03 | dssp | ALL_proteins:psum | 75.4 | 84 | 78 | 63 | 74 | 74 | 73 | 71.4 | 76.7 | 73.0 | 66.6 | 2.7 | 0.35 | 0.36 | 0.35 | 0.69 | 0.61 | 0.54 | 8632.2 | 7.3 | 6.4 |
sec | 2004_03 | dssp | ALL_proteins:sig | 10.7 | 34 | 32 | 38 | 44 | 17 | 15 | 15.5 | 26.1 | 27.4 | 18.7 | 4.8 | 0.17 | 0.17 | 0.17 | 0.25 | 0.28 | 0.19 | 8558.9 | 7.7 | 7.1 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 0.59 | 1 | 1 | 2 | 2 | 0.97 | 0.84 | 0.85 | 1.4 | 1.5 | 1.0 | 0.26 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 471.8 | 0.42 | 0.39 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |