METHOD about: | ../../../doc/explain_methods.html#PX_about_sable2 |
METHOD url: | SABLE2 |
TYPE : | sec |
NPROT : | 30 |
NWEEKS : | 6 |
NOTE 1 : | here ALL results obtained for SABLE2 in month 2004_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_03 | dssp | ALL_proteins:psum | 76.9 | 89 | 80 | 70 | 65 | 66 | 78 | 73.2 | 85.8 | 79.9 | 59.4 | 2.6 | 0.42 | 0.43 | 0.40 | 0.71 | 0.61 | 0.56 | 9333.3 | 9.5 | 5.4 |
sec | 2004_03 | dssp | ALL_proteins:sig | 14.2 | 29 | 28 | 58 | 54 | 24 | 24 | 21.3 | 22.5 | 33.3 | 27.2 | 4.7 | 0.21 | 0.24 | 0.20 | 0.25 | 0.39 | 0.26 | 9397.9 | 10.0 | 6.3 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 2.5 | 5 | 5 | 10 | 9 | 4 | 4 | 3.8 | 4.1 | 6.0 | 4.9 | 0.86 | 0.04 | 0.04 | 0.03 | 0.04 | 0.07 | 0.04 | 1715.8 | 1.8 | 1.1 |
sec | 2004_03 | dssp | THIS_month:psum | 74.6 | 76 | 67 | 32 | 30 | 65 | 84 | 69.3 | 77.5 | 65.3 | 66.5 | 2.5 | 0.39 | 0.38 | 0.40 | 0.76 | 0.58 | 0.55 | 91.6 | 12.9 | 2.3 |
sec | 2004_03 | dssp | 1nng:A | 87.2 | 87 | 85 | 92 | 89 | 81 | 86 | 84.9 | 90 | 88 | 77 | 0.7 | 0.59 | 0.60 | 0.60 | 0.82 | 0.85 | 0.74 | 100.0 | 0.00 | 1.0 |
sec | 2004_03 | dssp | 1oyi:A | 79.0 | 93 | 78 | 71 | 62 | 60 | 87 | 81.7 | 95 | 62 | 68 | 3.2 | 0.41 | 0.40 | 0.42 | 0.68 | 0.62 | 0.61 | 100.0 | 9.0 | 1.0 |
sec | 2004_03 | dssp | 1pgy:A | 83.0 | 100 | 82 | 0 | 0 | 42 | 100 | 44.7 | 42 | 100 | 50 | 0.0 | 0.39 | 0.35 | 0.44 | 0.64 | 1.0 | 0.58 | 100.0 | 14.0 | 2.0 |
sec | 2004_03 | dssp | 1pjv:A | 31.2 | 0 | 0 | 0 | 0 | 76 | 37 | 8.8 | 0 | 0 | 21 | 6.2 | 0.10 | 0.06 | 0.15 | 1.0 | -0.29 | -0.16 | 100.0 | 28.0 | 15.0 |
sec | 2004_03 | dssp | 1qw2:A | 74.5 | 92 | 58 | 77 | 82 | 63 | 85 | 75.6 | 86 | 82 | 66 | 3.9 | 0.38 | 0.39 | 0.38 | 0.63 | 0.71 | 0.57 | 0.0 | 13.0 | 1.0 |
sec | 2004_03 | dssp | 1r4g:A | 88.7 | 97 | 87 | 0 | 0 | 70 | 92 | 98.1 | 100 | 100 | 94 | 0.0 | 0.46 | 0.44 | 0.50 | 0.73 | 1.0 | 0.73 | 100.0 | 7.0 | 0.00 |
sec | 2004_03 | dssp | 1rkl:A | 91.7 | 100 | 88 | 0 | 0 | 76 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 0.63 | 0.60 | 0.67 | 0.82 | 1.0 | 0.82 | 100.0 | 8.0 | 0.00 |
sec | 2004_03 | dssp | 1rqt:A | 83.8 | 100 | 78 | 0 | 0 | 60 | 100 | 56.5 | 65 | 100 | 47 | 0.0 | 0.46 | 0.42 | 0.51 | 0.68 | 1.0 | 0.68 | 100.0 | 16.0 | 0.00 |
sec | 2004_03 | dssp | 1s4z:C | 43.3 | 0 | 0 | 0 | 0 | 48 | 100 | 41.9 | 100 | 0 | 45 | 10.0 | 0.18 | 0.28 | 0.09 | 1.0 | -0.13 | 0.29 | 100.0 | 43.0 | 3.0 |
sec | 2004_03 | dssp | 1v74:A | 71.0 | 64 | 83 | 66 | 56 | 78 | 71 | 74.0 | 74 | 57 | 82 | 5.6 | 0.26 | 0.27 | 0.27 | 0.60 | 0.50 | 0.53 | 100.0 | 8.0 | 3.0 |
sec | 2004_03 | dssp | 1v74:B | 75.9 | 90 | 80 | 0 | 0 | 54 | 73 | 70.0 | 79 | 0 | 57 | 1.1 | 0.25 | 0.25 | 0.26 | 0.57 | -0.02 | 0.47 | 100.0 | 8.0 | 1.0 |
sec | 2004_03 | dssp | 1vjq:A | 86.3 | 95 | 92 | 85 | 81 | 78 | 84 | 95.7 | 100 | 95 | 92 | 0.0 | 0.61 | 0.61 | 0.61 | 0.90 | 0.76 | 0.70 | 100.0 | 1.0 | 1.0 |
sec | 2004_03 | dssp | THIS_month:psum | 74.6 | 76 | 67 | 32 | 30 | 65 | 84 | 69.3 | 77.5 | 65.3 | 66.5 | 2.5 | 0.39 | 0.38 | 0.40 | 0.76 | 0.58 | 0.55 | 91.6 | 12.9 | 2.3 |
sec | 2004_03 | dssp | ALL_proteins:psum | 76.9 | 89 | 80 | 70 | 65 | 66 | 78 | 73.2 | 85.8 | 79.9 | 59.4 | 2.6 | 0.42 | 0.43 | 0.40 | 0.71 | 0.61 | 0.56 | 9333.3 | 9.5 | 5.4 |
sec | 2004_03 | dssp | ALL_proteins:sig | 14.2 | 29 | 28 | 58 | 54 | 24 | 24 | 21.3 | 22.5 | 33.3 | 27.2 | 4.7 | 0.21 | 0.24 | 0.20 | 0.25 | 0.39 | 0.26 | 9397.9 | 10.0 | 6.3 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 2.5 | 5 | 5 | 10 | 9 | 4 | 4 | 3.8 | 4.1 | 6.0 | 4.9 | 0.86 | 0.04 | 0.04 | 0.03 | 0.04 | 0.07 | 0.04 | 1715.8 | 1.8 | 1.1 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |