METHOD about: | ../../../doc/explain_methods.html#PX_about_psipred |
METHOD url: | PSIpred |
TYPE : | sec |
NPROT : | 374 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for PSIpred in month 2004_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_03 | dssp | ALL_proteins:psum | 75.9 | 82 | 80 | 66 | 73 | 75 | 74 | 73.0 | 77.9 | 72.9 | 69.1 | 2.8 | 0.37 | 0.37 | 0.37 | 0.69 | 0.61 | 0.56 | 8529.4 | 7.0 | 5.7 |
sec | 2004_03 | dssp | ALL_proteins:sig | 12.1 | 32 | 32 | 39 | 43 | 14 | 13 | 17.3 | 24.8 | 29.0 | 18.3 | 4.6 | 0.17 | 0.17 | 0.18 | 0.25 | 0.29 | 0.19 | 8455.5 | 8.8 | 7.1 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 0.62 | 1 | 1 | 2 | 2 | 0.76 | 0.70 | 0.89 | 1.2 | 1.5 | 0.95 | 0.24 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 437.2 | 0.45 | 0.36 |
sec | 2004_03 | dssp | THIS_month:psum | 79.5 | 78 | 80 | 33 | 32 | 78 | 83 | 80.8 | 89.7 | 66.2 | 79.8 | 1.8 | 0.46 | 0.45 | 0.46 | 0.77 | 0.60 | 0.62 | 100 | 6.6 | 3.1 |
sec | 2004_03 | dssp | 1nng:A | 89.4 | 87 | 90 | 96 | 89 | 83 | 88 | 91.0 | 90 | 94 | 88 | 0.0 | 0.66 | 0.66 | 0.66 | 0.86 | 0.88 | 0.77 | 100.0 | 0.00 | 2.0 |
sec | 2004_03 | dssp | 1oyi:A | 80.6 | 87 | 87 | 42 | 60 | 82 | 76 | 90.3 | 98 | 50 | 91 | 3.2 | 0.40 | 0.40 | 0.41 | 0.74 | 0.45 | 0.66 | 100.0 | 0.00 | 3.0 |
sec | 2004_03 | dssp | 1pgy:A | 87.2 | 90 | 90 | 0 | 0 | 78 | 78 | 97.4 | 100 | 100 | 91 | 0.0 | 0.39 | 0.39 | 0.39 | 0.69 | 1.0 | 0.69 | 100.0 | 0.00 | 0.00 |
sec | 2004_03 | dssp | 1pjv:A | 43.8 | 44 | 80 | 0 | 0 | 76 | 40 | 26.5 | 60 | 0 | 24 | 0.0 | 0.22 | 0.17 | 0.28 | 0.49 | -0.17 | -0.02 | 100.0 | 12.0 | 25.0 |
sec | 2004_03 | dssp | 1qw2:A | 79.4 | 92 | 79 | 74 | 74 | 76 | 83 | 81.8 | 94 | 73 | 80 | 2.9 | 0.44 | 0.45 | 0.44 | 0.80 | 0.62 | 0.64 | 100.0 | 3.0 | 0.00 |
sec | 2004_03 | dssp | 1r4g:A | 94.3 | 100 | 92 | 0 | 0 | 82 | 100 | 98.1 | 100 | 100 | 94 | 0.0 | 0.71 | 0.68 | 0.74 | 0.87 | 1.0 | 0.87 | 100.0 | 5.0 | 0.00 |
sec | 2004_03 | dssp | 1rkl:A | 94.4 | 100 | 92 | 0 | 0 | 84 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 0.72 | 0.70 | 0.75 | 0.88 | 1.0 | 0.88 | 100.0 | 5.0 | 0.00 |
sec | 2004_03 | dssp | 1rqt:A | 86.5 | 100 | 81 | 0 | 0 | 66 | 100 | 68.8 | 65 | 100 | 73 | 0.0 | 0.52 | 0.48 | 0.56 | 0.73 | 1.0 | 0.73 | 100.0 | 13.0 | 0.00 |
sec | 2004_03 | dssp | 1s4z:C | 53.3 | 0 | 0 | 0 | 0 | 59 | 94 | 55.0 | 100 | 0 | 59 | 6.6 | 0.08 | 0.12 | 0.04 | 1.0 | -0.13 | 0.15 | 100.0 | 30.0 | 3.0 |
sec | 2004_03 | dssp | 1v74:A | 74.8 | 61 | 88 | 52 | 61 | 95 | 72 | 74.8 | 76 | 57 | 81 | 7.4 | 0.35 | 0.34 | 0.37 | 0.63 | 0.46 | 0.67 | 100.0 | 11.0 | 2.0 |
sec | 2004_03 | dssp | 1v74:B | 82.8 | 87 | 88 | 50 | 25 | 77 | 80 | 90.7 | 94 | 25 | 87 | 2.2 | 0.36 | 0.38 | 0.35 | 0.68 | 0.33 | 0.67 | 100.0 | 1.0 | 2.0 |
sec | 2004_03 | dssp | 1vjq:A | 87.7 | 95 | 95 | 85 | 81 | 82 | 85 | 95.4 | 100 | 96 | 90 | 0.0 | 0.64 | 0.65 | 0.64 | 0.93 | 0.76 | 0.73 | 100.0 | 0.00 | 1.0 |
sec | 2004_03 | dssp | THIS_month:psum | 79.5 | 78 | 80 | 33 | 32 | 78 | 83 | 80.8 | 89.7 | 66.2 | 79.8 | 1.8 | 0.46 | 0.45 | 0.46 | 0.77 | 0.60 | 0.62 | 100 | 6.6 | 3.1 |
sec | 2004_03 | dssp | ALL_proteins:psum | 75.9 | 82 | 80 | 66 | 73 | 75 | 74 | 73.0 | 77.9 | 72.9 | 69.1 | 2.8 | 0.37 | 0.37 | 0.37 | 0.69 | 0.61 | 0.56 | 8529.4 | 7.0 | 5.7 |
sec | 2004_03 | dssp | ALL_proteins:sig | 12.1 | 32 | 32 | 39 | 43 | 14 | 13 | 17.3 | 24.8 | 29.0 | 18.3 | 4.6 | 0.17 | 0.17 | 0.18 | 0.25 | 0.29 | 0.19 | 8455.5 | 8.8 | 7.1 |
sec | 2004_03 | dssp | ALL_proteins:errsig | 0.62 | 1 | 1 | 2 | 2 | 0.76 | 0.70 | 0.89 | 1.2 | 1.5 | 0.95 | 0.24 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 437.2 | 0.45 | 0.36 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |