| METHOD about: | ../../doc/explain_methods.html#PX_about_jufo |
| METHOD url: | JUFO |
| METHOD quote: | J Meiler, M Mueller, A Zeidler, and F Schmaeschke:: Generation and evaluation of dimension-reduced amino acid parameter representations by artificial neural networks. Journal of Molecular Modelling, 7,360-369, 2001 |
| TYPE : | sec |
| NPROT : | 133 |
| NWEEKS : | 38 |
| AVE_Q3 : | 68.9 |
| AVE_SOV: | 66.0 |
| NOTE 1 : | here ALL results obtained for jufo are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2004_04_28 | dssp | psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
| sec | 2004_04_28 | dssp | sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
| sec | 2004_04_28 | dssp | errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | jufo | ALL | 133 | 68.9 | |
| sec | jufo | 2003_07 | 4 | 76.8 | old/2003_07_jufo.html |
| sec | jufo | 2003_08 | 5 | 64.3 | old/2003_08_jufo.html |
| sec | jufo | 2003_11 | 18 | 68.6 | old/2003_11_jufo.html |
| sec | jufo | 2003_12 | 16 | 68.9 | old/2003_12_jufo.html |
| sec | jufo | 2004_01 | 12 | 62.2 | old/2004_01_jufo.html |
| sec | jufo | 2004_02 | 18 | 68.8 | old/2004_02_jufo.html |
| sec | jufo | 2004_03 | 6 | 71.1 | old/2004_03_jufo.html |
| sec | jufo | ALL | 133 | 68.9 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |