METHOD about: | ../../../doc/explain_methods.html#PX_about_jufo |
METHOD url: | JUFO |
TYPE : | sec |
NPROT : | 133 |
NWEEKS : | 38 |
NOTE 1 : | here ALL results obtained for JUFO in month 2003_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_08 | dssp | ALL_proteins:psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
sec | 2003_08 | dssp | ALL_proteins:sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
sec | 2003_08 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
sec | 2003_08 | dssp | THIS_month:psum | 64.3 | 61 | 83 | 35 | 25 | 67 | 55 | 60.9 | 65.7 | 77.2 | 56.5 | 6 | 0.22 | 0.23 | 0.20 | 0.44 | 0.76 | 0.38 | 75 | 16.2 | 8.2 |
sec | 2003_08 | dssp | 1ouo:A | 59.1 | 55 | 70 | 75 | 48 | 55 | 58 | 56.7 | 65 | 48 | 53 | 2.1 | 0.19 | 0.20 | 0.19 | 0.44 | 0.49 | 0.21 | 100.0 | 7.0 | 9.0 |
sec | 2003_08 | dssp | 1pv6:A | 43.4 | 40 | 83 | 0 | 0 | 56 | 25 | 45.9 | 46 | 100 | 43 | 16.3 | 0.01 | 0.02 | 0.01 | 0.05 | 1.0 | 0.13 | 0.0 | 41.0 | 18.0 |
sec | 2003_08 | dssp | 1pw4:A | 78.4 | 78 | 88 | 0 | 0 | 78 | 71 | 72.3 | 72 | 100 | 72 | 4.9 | 0.28 | 0.33 | 0.25 | 0.54 | 1.0 | 0.62 | 100.0 | 8.0 | 4.0 |
sec | 2003_08 | dssp | 1q3k:A | 76.4 | 74 | 93 | 66 | 55 | 81 | 69 | 68.8 | 80 | 61 | 58 | 0.7 | 0.38 | 0.39 | 0.38 | 0.72 | 0.55 | 0.54 | 100.0 | 9.0 | 2.0 |
sec | 2003_08 | dssp | THIS_month:psum | 64.3 | 61 | 83 | 35 | 25 | 67 | 55 | 60.9 | 65.7 | 77.2 | 56.5 | 6 | 0.22 | 0.23 | 0.20 | 0.44 | 0.76 | 0.38 | 75 | 16.2 | 8.2 |
sec | 2003_08 | dssp | ALL_proteins:psum | 68.9 | 65 | 80 | 56 | 61 | 79 | 65 | 65.9 | 67.4 | 65.6 | 66.8 | 5.0 | 0.31 | 0.33 | 0.29 | 0.59 | 0.49 | 0.49 | 8120.3 | 11.5 | 10.1 |
sec | 2003_08 | dssp | ALL_proteins:sig | 11.6 | 33 | 38 | 40 | 44 | 15 | 17 | 17.3 | 30.6 | 33.8 | 18.4 | 7.4 | 0.45 | 0.61 | 0.30 | 0.29 | 0.37 | 0.21 | 8069.5 | 11.1 | 10.4 |
sec | 2003_08 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 3 | 3 | 1 | 1 | 1.5 | 2.6 | 2.9 | 1.5 | 0.64 | 0.03 | 0.05 | 0.02 | 0.02 | 0.03 | 0.01 | 699.7 | 0.96 | 0.90 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |