EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	1701	120	method/index.html

APSSP	1312	70	method/apssp.html
APSSP2	672	29	method/apssp2.html
JPred	1218	106	method/jpred.html
PHD	1599	109	method/phd.html
PHDpsi	1598	109	method/phdpsi.html
PROF_king	1276	97	method/prof_king.html
PROFsec	1554	107	method/profsec.html
Prospect	103	20	method/prospect.html
PSIpred	1461	111	method/psipred.html
SAM-T99sec	543	100	method/samt99_sec.html
SSpro2	1348	71	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 30 proteins and 10 methods (HTML - ASCII)
- set 2: 134 proteins and 8 methods (HTML - ASCII)
- set 3: 247 proteins and 7 methods (HTML - ASCII)
- set 4: 302 proteins and 6 methods (HTML - ASCII)
- set 5: 302 proteins and 6 methods (HTML - ASCII)
- set 6: 567 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	30	dssp	1	APSSP2	76.6	+/-1.6	71.0	+/-2.8	2.3	+/-0.5	0.38	+/-0.03	0.80	+/-0.05	0.76	+/-0.04	0.70	+/-0.04	90.0	+/-5.6
				JPred	73.4	+/-1.7	70.5	+/-3.0	1.7	+/-0.5	0.33	+/-0.03	0.67	+/-0.05	0.58	+/-0.05	0.55	+/-0.03	80.0	+/-7.4
				PHDpsi	74.9	+/-2.0	69.7	+/-3.0	1.7	+/-0.4	0.35	+/-0.03	0.67	+/-0.04	0.59	+/-0.05	0.53	+/-0.03	93.3	+/-4.6
				PROF_king	73.6	+/-2.0	69.6	+/-3.4	3.5	+/-1.0	0.33	+/-0.03	0.70	+/-0.05	0.61	+/-0.05	0.55	+/-0.03	83.3	+/-6.9
				PROFsec	77.2	+/-1.7	74.7	+/-2.8	1.8	+/-0.4	0.38	+/-0.03	0.71	+/-0.04	0.64	+/-0.04	0.57	+/-0.03	90.0	+/-5.6
				Prospect	73.9	+/-1.6	70.0	+/-3.0	2.1	+/-0.5	0.33	+/-0.03	0.64	+/-0.05	0.57	+/-0.05	0.50	+/-0.03	83.3	+/-6.9
				PSIpred	77.9	+/-1.9	73.9	+/-2.8	2.1	+/-0.6	0.41	+/-0.03	0.72	+/-0.05	0.67	+/-0.04	0.60	+/-0.03	86.7	+/-6.3
				SAM-T99sec	76.5	+/-1.7	70.9	+/-3.0	1.7	+/-0.5	0.38	+/-0.03	0.69	+/-0.04	0.63	+/-0.04	0.55	+/-0.03	86.7	+/-6.3
				SSpro2	76.0	+/-1.6	69.0	+/-2.3	2.3	+/-0.4	0.37	+/-0.03	0.73	+/-0.05	0.63	+/-0.04	0.58	+/-0.03	76.7	+/-7.9
common 1	30	dssp	2	PHD	70.0	+/-2.5	64.3	+/-3.2	4.3	+/-1.4	0.30	+/-0.03	0.61	+/-0.06	0.52	+/-0.06	0.49	+/-0.03	83.3	+/-6.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	134	dssp	1	JPred	72.5	+/-1.1	67.6	+/-1.8	2.0	+/-0.3	0.32	+/-0.01	0.67	+/-0.02	0.58	+/-0.03	0.55	+/-0.02	81.3	+/-3.4
				PHDpsi	73.0	+/-0.9	67.9	+/-1.4	2.4	+/-0.3	0.31	+/-0.01	0.67	+/-0.02	0.59	+/-0.03	0.53	+/-0.02	85.8	+/-3.0
				PROF_king	72.4	+/-0.9	66.7	+/-1.6	2.5	+/-0.4	0.30	+/-0.01	0.70	+/-0.02	0.61	+/-0.03	0.55	+/-0.02	82.8	+/-3.3
				PROFsec	74.9	+/-0.9	70.7	+/-1.4	2.1	+/-0.3	0.34	+/-0.01	0.71	+/-0.02	0.64	+/-0.02	0.57	+/-0.02	84.3	+/-3.2
				PSIpred	74.8	+/-1.0	70.8	+/-1.5	2.2	+/-0.3	0.39	+/-0.04	0.72	+/-0.02	0.67	+/-0.03	0.60	+/-0.02	85.8	+/-3.0
				SAM-T99sec	74.3	+/-0.9	68.1	+/-1.5	1.9	+/-0.2	0.37	+/-0.04	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.02	84.3	+/-3.2
				SSpro2	73.9	+/-0.9	67.6	+/-1.5	2.6	+/-0.3	0.37	+/-0.04	0.73	+/-0.02	0.63	+/-0.02	0.58	+/-0.02	81.3	+/-3.4
common 2	134	dssp	2	PHD	68.9	+/-1.0	64.1	+/-1.4	4.4	+/-0.5	0.27	+/-0.01	0.61	+/-0.03	0.52	+/-0.03	0.49	+/-0.02	79.9	+/-3.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	247	dssp	1	PROFsec	75.4	+/-0.6	71.0	+/-1.0	2.2	+/-0.2	0.34	+/-0.01	0.71	+/-0.02	0.64	+/-0.02	0.57	+/-0.01	83.8	+/-2.3
				PSIpred	75.3	+/-0.7	70.8	+/-1.1	2.2	+/-0.2	0.38	+/-0.02	0.72	+/-0.02	0.67	+/-0.02	0.60	+/-0.01	85.8	+/-2.2
				SAM-T99sec	75.1	+/-0.7	69.4	+/-1.0	1.8	+/-0.2	0.36	+/-0.02	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.01	84.6	+/-2.3
common 3	247	dssp	2	JPred	73.7	+/-0.7	67.6	+/-1.2	1.9	+/-0.2	0.33	+/-0.01	0.67	+/-0.02	0.58	+/-0.02	0.55	+/-0.01	80.6	+/-2.5
				PHDpsi	73.6	+/-0.6	68.0	+/-1.0	2.6	+/-0.2	0.28	+/-0.03	0.67	+/-0.02	0.59	+/-0.02	0.53	+/-0.01	84.2	+/-2.3
				PROF_king	73.1	+/-0.7	67.1	+/-1.1	2.5	+/-0.2	0.31	+/-0.01	0.70	+/-0.02	0.61	+/-0.02	0.55	+/-0.01	83.4	+/-2.4
common 3	247	dssp	3	PHD	70.2	+/-0.7	65.3	+/-1.0	4.0	+/-0.3	0.24	+/-0.03	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	80.6	+/-2.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	302	dssp	1	PROFsec	75.6	+/-0.6	71.3	+/-0.9	2.2	+/-0.2	0.35	+/-0.01	0.71	+/-0.01	0.64	+/-0.02	0.57	+/-0.01	84.4	+/-2.1
				PSIpred	75.4	+/-0.7	71.4	+/-1.0	2.4	+/-0.2	0.38	+/-0.02	0.72	+/-0.01	0.67	+/-0.02	0.60	+/-0.01	85.8	+/-2.0
				SAM-T99sec	75.4	+/-0.6	70.1	+/-0.9	1.9	+/-0.2	0.36	+/-0.02	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.01	84.8	+/-2.1
common 4	302	dssp	2	JPred	73.8	+/-0.6	68.2	+/-1.0	2.1	+/-0.2	0.33	+/-0.01	0.67	+/-0.02	0.58	+/-0.02	0.55	+/-0.01	80.8	+/-2.3
				PHDpsi	73.8	+/-0.6	68.6	+/-0.9	2.6	+/-0.2	0.29	+/-0.03	0.67	+/-0.01	0.59	+/-0.02	0.53	+/-0.01	83.4	+/-2.1
common 4	302	dssp	3	PHD	70.5	+/-0.7	66.0	+/-0.9	4.2	+/-0.3	0.25	+/-0.03	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	80.8	+/-2.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	302	dssp	1	PROFsec	75.6	+/-0.6	71.3	+/-0.9	2.2	+/-0.2	0.35	+/-0.01	0.71	+/-0.01	0.64	+/-0.02	0.57	+/-0.01	84.4	+/-2.1
				PSIpred	75.4	+/-0.7	71.4	+/-1.0	2.4	+/-0.2	0.38	+/-0.02	0.72	+/-0.01	0.67	+/-0.02	0.60	+/-0.01	85.8	+/-2.0
				SAM-T99sec	75.4	+/-0.6	70.1	+/-0.9	1.9	+/-0.2	0.36	+/-0.02	0.69	+/-0.02	0.63	+/-0.02	0.55	+/-0.01	84.8	+/-2.1
common 5	302	dssp	2	JPred	73.8	+/-0.6	68.2	+/-1.0	2.1	+/-0.2	0.33	+/-0.01	0.67	+/-0.02	0.58	+/-0.02	0.55	+/-0.01	80.8	+/-2.3
				PHDpsi	73.8	+/-0.6	68.6	+/-0.9	2.6	+/-0.2	0.29	+/-0.03	0.67	+/-0.01	0.59	+/-0.02	0.53	+/-0.01	83.4	+/-2.1
common 5	302	dssp	3	PHD	70.5	+/-0.7	66.0	+/-0.9	4.2	+/-0.3	0.25	+/-0.03	0.61	+/-0.02	0.52	+/-0.02	0.49	+/-0.01	80.8	+/-2.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	567	dssp	1	PROFsec	75.8	+/-0.4	71.8	+/-0.6	2.4	+/-0.2	0.35	+/-0.01	0.71	+/-0.01	0.64	+/-0.01	0.57	+/-0.01	83.2	+/-1.6
				PSIpred	75.8	+/-0.5	71.8	+/-0.7	2.5	+/-0.2	0.37	+/-0.01	0.72	+/-0.01	0.67	+/-0.01	0.60	+/-0.01	84.5	+/-1.5
common 6	567	dssp	2	PHDpsi	73.5	+/-0.5	68.8	+/-0.6	3.0	+/-0.2	0.30	+/-0.02	0.67	+/-0.01	0.59	+/-0.01	0.53	+/-0.01	81.0	+/-1.7
common 6	567	dssp	3	PHD	70.5	+/-0.5	66.4	+/-0.7	4.4	+/-0.2	0.26	+/-0.02	0.61	+/-0.01	0.52	+/-0.01	0.49	+/-0.01	77.6	+/-1.8