Home - sec - acc - cm - fr - con - Bottom - Explain scores

EVA sec results for: PHDpsi

Organisation of method specific results

AVERAGES : averages over all weeks
EACH MONTH : average over one month note: detail lists all proteins of that month
FTP RDB-table : flat file with all results note: may be VERY large!!

METHOD about:	../../doc/explain_method2.html#PX_about_PHDpsi
METHOD url:	PHDpsi
TYPE :	sec
NPROT :	248
NWEEKS :	36
NOTE 1 :	here ALL results obtained for phdpsi are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE
sec	2000_12_29	dssp	psum	74.6	71	50	73	72	54	72	70.1	73.5	68.7	65.2	2.8	0.29	0.29	0.30	0.64	0.62	0.52	7822.5	6.4	5.0
sec	2000_12_29	dssp	sig	9.0	26	30	14	26	32	11	13.5	23.7	25.7	16.3	3.7	0.53	0.60	0.46	0.20	0.25	0.14	7760.1	8.3	6.0
sec	2000_12_29	dssp	errsig	0.57	1	1	0.90	1	2	0.74	0.86	1.5	1.6	1.0	0.24	0.03	0.03	0.03	0.01	0.01	0.00	492.7	0.52	0.38

Averages over each month

Type	Method	Month	Nprot	Average Q3 for month	File with details for month
sec	phdpsi	ALL	248	74.7
sec	phdpsi	2000_04	24	72	2000_04_phdpsi.html
sec	phdpsi	2000_05	18	69	2000_05_phdpsi.html
sec	phdpsi	2000_06	16	70	2000_06_phdpsi.html
sec	phdpsi	2000_07	37	73	2000_07_phdpsi.html
sec	phdpsi	2000_08	33	72	2000_08_phdpsi.html
sec	phdpsi	2000_09	40	73	2000_09_phdpsi.html
sec	phdpsi	2000_10	26	70	2000_10_phdpsi.html
sec	phdpsi	2000_11	31	71	2000_11_phdpsi.html
sec	phdpsi	2000_12	31	75	2000_12_phdpsi.html
sec	phdpsi	ALL	248	74.7

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

All results

Last update: Dec 29, 2000
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva
WWW mirrors: ../../doc/mirrors.html

Explain scores - Home - sec - acc - cm - fr - con - Top