METHOD about: | ../../doc/explain_method2.html#PX_about_PHDpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 248 |
NWEEKS : | 36 |
NOTE 1 : | here ALL results obtained for phdpsi in month 2000_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_08 | dssp | ALL_proteins:psum | 74.6 | 71 | 50 | 73 | 72 | 54 | 72 | 70.1 | 73.5 | 68.7 | 65.2 | 2.8 | 0.29 | 0.29 | 0.30 | 0.64 | 0.62 | 0.52 | 7822.5 | 6.4 | 5.0 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.0 | 26 | 30 | 14 | 26 | 32 | 11 | 13.5 | 23.7 | 25.7 | 16.3 | 3.7 | 0.53 | 0.60 | 0.46 | 0.20 | 0.25 | 0.14 | 7760.1 | 8.3 | 6.0 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.57 | 1 | 1 | 0.90 | 1 | 2 | 0.74 | 0.86 | 1.5 | 1.6 | 1.0 | 0.24 | 0.03 | 0.03 | 0.03 | 0.01 | 0.01 | 0.00 | 492.7 | 0.52 | 0.38 |
sec | 2000_08 | dssp | THIS_month:psum | 74.7 | 69 | 62 | 75 | 73 | 64 | 74 | 71.9 | 76.6 | 65.8 | 67.4 | 3.5 | 0.34 | 0.33 | 0.34 | 0.66 | 0.52 | 0.54 | 78.1 | 5.6 | 6.2 |
sec | 2000_08 | dssp | 1c3g:A | 75.9 | 25 | 77 | 84 | 57 | 78 | 75 | 68.3 | 21 | 74 | 70 | 4.1 | 0.29 | 0.27 | 0.31 | 0.33 | 0.60 | 0.60 | 100.0 | 5.0 | 0.00 |
sec | 2000_08 | dssp | 1c8n:A | 70.9 | 39 | 75 | 79 | 76 | 73 | 68 | 67.5 | 37 | 73 | 72 | 2.6 | 0.26 | 0.25 | 0.28 | 0.48 | 0.59 | 0.47 | 100.0 | 8.0 | 1.0 |
sec | 2000_08 | dssp | 1crz:A | 76.9 | 66 | 68 | 86 | 92 | 82 | 71 | 74.6 | 79 | 74 | 73 | 0.4 | 0.35 | 0.34 | 0.37 | 0.76 | 0.59 | 0.56 | 100.0 | 2.0 | 6.0 |
sec | 2000_08 | dssp | 1d5k:A | 68.5 | 85 | 62 | 63 | 58 | 78 | 70 | 79.2 | 96 | 78 | 69 | 7.8 | 0.27 | 0.28 | 0.28 | 0.59 | 0.54 | 0.48 | 0.0 | 11.0 | 7.0 |
sec | 2000_08 | dssp | 1de5:A | 74.6 | 87 | 35 | 71 | 79 | 48 | 73 | 69.5 | 85 | 39 | 61 | 3.3 | 0.29 | 0.28 | 0.30 | 0.67 | 0.34 | 0.54 | 100.0 | 4.0 | 3.0 |
sec | 2000_08 | dssp | 1de6:A | 74.8 | 86 | 36 | 71 | 80 | 48 | 73 | 65.3 | 85 | 40 | 53 | 3.1 | 0.29 | 0.29 | 0.30 | 0.67 | 0.35 | 0.54 | 100.0 | 3.0 | 2.0 |
sec | 2000_08 | dssp | 1dkm:A | 76.6 | 74 | 64 | 82 | 88 | 65 | 71 | 65.9 | 73 | 71 | 57 | 2.1 | 0.36 | 0.36 | 0.36 | 0.70 | 0.58 | 0.57 | 100.0 | 6.0 | 0.00 |
sec | 2000_08 | dssp | 1dkn:A | 76.8 | 74 | 66 | 82 | 88 | 65 | 72 | 65.0 | 72 | 74 | 55 | 2.1 | 0.36 | 0.36 | 0.36 | 0.70 | 0.59 | 0.58 | 100.0 | 6.0 | 0.00 |
sec | 2000_08 | dssp | 1dko:A | 76.3 | 73 | 67 | 82 | 88 | 65 | 71 | 66.4 | 72 | 76 | 57 | 2.1 | 0.35 | 0.35 | 0.36 | 0.68 | 0.60 | 0.57 | 100.0 | 7.0 | 0.00 |
sec | 2000_08 | dssp | 1dkp:A | 75.9 | 72 | 67 | 82 | 88 | 64 | 70 | 66.1 | 70 | 75 | 58 | 2.4 | 0.34 | 0.35 | 0.35 | 0.68 | 0.59 | 0.57 | 100.0 | 7.0 | 0.00 |
sec | 2000_08 | dssp | 1dkq:A | 75.6 | 72 | 67 | 82 | 87 | 64 | 70 | 64.7 | 67 | 75 | 58 | 2.4 | 0.34 | 0.34 | 0.34 | 0.67 | 0.59 | 0.56 | 100.0 | 7.0 | 0.00 |
sec | 2000_08 | dssp | 1dw7:A | 68.6 | 100 | 84 | 52 | 68 | 53 | 87 | 58.7 | 100 | 65 | 48 | 0.0 | 0.39 | 0.41 | 0.37 | 0.79 | 0.51 | 0.44 | 100.0 | 7.0 | 15.0 |
sec | 2000_08 | dssp | 1eej:A | 84.7 | 93 | 78 | 79 | 90 | 79 | 81 | 84.2 | 91 | 74 | 83 | 0.4 | 0.56 | 0.56 | 0.56 | 0.87 | 0.72 | 0.68 | 100.0 | 1.0 | 0.00 |
sec | 2000_08 | dssp | 1eem:A | 86.5 | 89 | 61 | 88 | 90 | 86 | 81 | 84.4 | 89 | 73 | 80 | 0.8 | 0.51 | 0.50 | 0.53 | 0.79 | 0.71 | 0.73 | 100.0 | 0.00 | 2.0 |
sec | 2000_08 | dssp | 1eg3:A | 76.2 | 83 | 38 | 71 | 88 | 30 | 69 | 69.1 | 77 | 33 | 63 | 4.2 | 0.32 | 0.33 | 0.31 | 0.67 | 0.27 | 0.55 | 100.0 | 3.0 | 1.0 |
sec | 2000_08 | dssp | 1eg4:A | 76.2 | 83 | 38 | 71 | 88 | 30 | 69 | 69.1 | 77 | 33 | 63 | 4.2 | 0.32 | 0.33 | 0.31 | 0.67 | 0.27 | 0.55 | 100.0 | 3.0 | 1.0 |
sec | 2000_08 | dssp | 1eiz:A | 88.3 | 95 | 70 | 95 | 88 | 100 | 82 | 96.4 | 100 | 88 | 99 | 2.7 | 0.64 | 0.64 | 0.66 | 0.87 | 0.79 | 0.81 | 0.0 | 2.0 | 8.0 |
sec | 2000_08 | dssp | 1ej0:A | 88.3 | 95 | 70 | 95 | 88 | 100 | 82 | 96.4 | 100 | 88 | 99 | 2.7 | 0.64 | 0.64 | 0.66 | 0.87 | 0.79 | 0.81 | 0.0 | 2.0 | 8.0 |
sec | 2000_08 | dssp | 1emw:A | 87.5 | 100 | 81 | 86 | 80 | 85 | 91 | 97.7 | 100 | 95 | 98 | 0.0 | 0.61 | 0.62 | 0.60 | 0.86 | 0.78 | 0.74 | 100.0 | 4.0 | 1.0 |
sec | 2000_08 | dssp | 1eok:A | 68.4 | 55 | 83 | 73 | 83 | 45 | 74 | 69.2 | 63 | 79 | 70 | 6.7 | 0.25 | 0.27 | 0.25 | 0.55 | 0.52 | 0.50 | 100.0 | 12.0 | 13.0 |
sec | 2000_08 | dssp | 1eom:A | 68.6 | 55 | 83 | 73 | 84 | 45 | 74 | 69.2 | 63 | 79 | 69 | 6.7 | 0.26 | 0.27 | 0.26 | 0.55 | 0.52 | 0.50 | 100.0 | 12.0 | 13.0 |
sec | 2000_08 | dssp | 1evw:A | 55.6 | 9 | 60 | 70 | 37 | 46 | 63 | 51.4 | 12 | 73 | 51 | 9.8 | 0.09 | 0.08 | 0.10 | 0.10 | 0.27 | 0.31 | 100.0 | 14.0 | 9.0 |
sec | 2000_08 | dssp | 1evx:A | 58.0 | 10 | 66 | 70 | 42 | 48 | 66 | 51.7 | 13 | 67 | 53 | 9.2 | 0.10 | 0.10 | 0.12 | 0.13 | 0.32 | 0.34 | 100.0 | 14.0 | 11.0 |
sec | 2000_08 | dssp | 1ew4:A | 84.0 | 93 | 73 | 84 | 91 | 86 | 76 | 92.1 | 100 | 85 | 91 | 0.9 | 0.55 | 0.55 | 0.56 | 0.89 | 0.71 | 0.68 | 100.0 | 0.00 | 4.0 |
sec | 2000_08 | dssp | 1eww:A | 48.9 | 0 | 71 | 44 | 0 | 19 | 89 | 39.6 | 100 | 30 | 40 | 0.0 | 0.01 | 0.02 | 0.01 | 1.0 | 0.11 | 0.11 | 0.0 | 0.00 | 42.0 |
sec | 2000_08 | dssp | 1ezg:A | 79.3 | 0 | 36 | 92 | 0 | 58 | 82 | 65.4 | 100 | 44 | 71 | 0.0 | 0.10 | 0.09 | 0.12 | 1.0 | 0.34 | 0.34 | 100.0 | 0.00 | 8.0 |
sec | 2000_08 | dssp | 1f0k:A | 82.3 | 87 | 87 | 74 | 82 | 82 | 82 | 80.5 | 80 | 87 | 77 | 2.0 | 0.46 | 0.46 | 0.47 | 0.70 | 0.82 | 0.65 | 100.0 | 2.0 | 0.00 |
sec | 2000_08 | dssp | 1f2t:B | 74.1 | 95 | 51 | 63 | 68 | 95 | 75 | 76.6 | 96 | 61 | 60 | 10.4 | 0.36 | 0.33 | 0.39 | 0.61 | 0.62 | 0.58 | 0.0 | 17.0 | 13.0 |
sec | 2000_08 | dssp | 1f2u:A | 75.2 | 78 | 64 | 84 | 78 | 86 | 65 | 82.7 | 80 | 83 | 83 | 4.0 | 0.36 | 0.36 | 0.37 | 0.71 | 0.61 | 0.58 | 100.0 | 0.00 | 10.0 |
sec | 2000_08 | dssp | 1f2u:B | 69.7 | 92 | 47 | 57 | 63 | 95 | 69 | 75.6 | 97 | 57 | 60 | 11.7 | 0.29 | 0.27 | 0.32 | 0.53 | 0.60 | 0.51 | 0.0 | 19.0 | 14.0 |
sec | 2000_08 | dssp | 1fgx:A | 75.0 | 77 | 62 | 78 | 73 | 67 | 78 | 67.1 | 74 | 65 | 64 | 1.8 | 0.32 | 0.33 | 0.33 | 0.67 | 0.55 | 0.53 | 100.0 | 1.0 | 1.0 |
sec | 2000_08 | dssp | 1qkr:A | 73.9 | 83 | 0 | 51 | 85 | 0 | 60 | 74.1 | 83 | 0 | 54 | 4.4 | 0.14 | 0.16 | 0.13 | 0.45 | -0.02 | 0.41 | 0.0 | 2.0 | 6.0 |
sec | 2000_08 | dssp | THIS_month:psum | 74.7 | 69 | 62 | 75 | 73 | 64 | 74 | 71.9 | 76.6 | 65.8 | 67.4 | 3.5 | 0.34 | 0.33 | 0.34 | 0.66 | 0.52 | 0.54 | 78.1 | 5.6 | 6.2 |
sec | 2000_08 | dssp | ALL_proteins:psum | 74.6 | 71 | 50 | 73 | 72 | 54 | 72 | 70.1 | 73.5 | 68.7 | 65.2 | 2.8 | 0.29 | 0.29 | 0.30 | 0.64 | 0.62 | 0.52 | 7822.5 | 6.4 | 5.0 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.0 | 26 | 30 | 14 | 26 | 32 | 11 | 13.5 | 23.7 | 25.7 | 16.3 | 3.7 | 0.53 | 0.60 | 0.46 | 0.20 | 0.25 | 0.14 | 7760.1 | 8.3 | 6.0 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.57 | 1 | 1 | 0.90 | 1 | 2 | 0.74 | 0.86 | 1.5 | 1.6 | 1.0 | 0.24 | 0.03 | 0.03 | 0.03 | 0.01 | 0.01 | 0.00 | 492.7 | 0.52 | 0.38 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |