METHOD about: | ../../doc/explain_method2.html#PX_about_PHDpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 248 |
NWEEKS : | 36 |
NOTE 1 : | here ALL results obtained for phdpsi in month 2000_10 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_10 | dssp | ALL_proteins:psum | 74.6 | 71 | 50 | 73 | 72 | 54 | 72 | 70.1 | 73.5 | 68.7 | 65.2 | 2.8 | 0.29 | 0.29 | 0.30 | 0.64 | 0.62 | 0.52 | 7822.5 | 6.4 | 5.0 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.0 | 26 | 30 | 14 | 26 | 32 | 11 | 13.5 | 23.7 | 25.7 | 16.3 | 3.7 | 0.53 | 0.60 | 0.46 | 0.20 | 0.25 | 0.14 | 7760.1 | 8.3 | 6.0 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.57 | 1 | 1 | 0.90 | 1 | 2 | 0.74 | 0.86 | 1.5 | 1.6 | 1.0 | 0.24 | 0.03 | 0.03 | 0.03 | 0.01 | 0.01 | 0.00 | 492.7 | 0.52 | 0.38 |
sec | 2000_10 | dssp | THIS_month:psum | 73.0 | 64 | 45 | 76 | 67 | 50 | 70 | 67.3 | 66.8 | 69.6 | 64.9 | 3.6 | 0.29 | 0.29 | 0.29 | 0.63 | 0.67 | 0.49 | 72 | 7.0 | 6.4 |
sec | 2000_10 | dssp | 1c4r:A | 79.4 | 66 | 83 | 75 | 75 | 81 | 76 | 77.4 | 66 | 81 | 73 | 0.0 | 0.35 | 0.35 | 0.36 | 0.69 | 0.64 | 0.58 | 0.0 | 0.00 | 1.0 |
sec | 2000_10 | dssp | 1d7b:A | 71.5 | 50 | 65 | 78 | 22 | 83 | 72 | 69.5 | 53 | 68 | 71 | 2.6 | 0.21 | 0.23 | 0.21 | 0.28 | 0.56 | 0.48 | 100.0 | 5.0 | 9.0 |
sec | 2000_10 | dssp | 1dl6:A | 79.3 | 0 | 87 | 78 | 0 | 38 | 97 | 67.5 | 100 | 65 | 67 | 0.0 | 0.23 | 0.28 | 0.18 | 1.0 | 0.48 | 0.48 | 100.0 | 0.00 | 17.0 |
sec | 2000_10 | dssp | 1e68:A | 58.6 | 58 | 0 | 58 | 81 | 0 | 43 | 48.7 | 52 | 100 | 36 | 12.8 | 0.09 | 0.13 | 0.07 | 0.14 | 1.0 | 0.31 | 0.0 | 21.0 | 12.0 |
sec | 2000_10 | dssp | 1eg2:A | 72.6 | 69 | 55 | 84 | 73 | 89 | 67 | 67.4 | 71 | 60 | 68 | 3.3 | 0.31 | 0.30 | 0.32 | 0.57 | 0.64 | 0.53 | 0.0 | 1.0 | 8.0 |
sec | 2000_10 | dssp | 1ei5:A | 65.1 | 67 | 42 | 83 | 61 | 85 | 60 | 58.3 | 69 | 50 | 58 | 6.3 | 0.21 | 0.21 | 0.23 | 0.51 | 0.48 | 0.46 | 100.0 | 2.0 | 17.0 |
sec | 2000_10 | dssp | 1eje:A | 67.7 | 51 | 67 | 76 | 90 | 72 | 59 | 63.0 | 61 | 71 | 56 | 1.5 | 0.26 | 0.26 | 0.28 | 0.63 | 0.51 | 0.40 | 100.0 | 8.0 | 3.0 |
sec | 2000_10 | dssp | 1ezf:A | 77.2 | 81 | 0 | 65 | 89 | 0 | 57 | 73.6 | 76 | 100 | 65 | 0.6 | 0.20 | 0.23 | 0.18 | 0.51 | 1.0 | 0.45 | 100.0 | 6.0 | 2.0 |
sec | 2000_10 | dssp | 1f3u:A | 66.9 | 66 | 66 | 67 | 37 | 90 | 63 | 76.1 | 45 | 84 | 76 | 5.0 | 0.25 | 0.27 | 0.24 | 0.39 | 0.62 | 0.41 | 100.0 | 10.0 | 12.0 |
sec | 2000_10 | dssp | 1f6u:A | 60.0 | 0 | 16 | 94 | 0 | 33 | 61 | 12.9 | 0 | 5 | 19 | 0.0 | 0.07 | 0.03 | 0.11 | 1.0 | 0.17 | -0.02 | 100.0 | 27.0 | 5.0 |
sec | 2000_10 | dssp | 1f81:A | 82.8 | 80 | 0 | 88 | 94 | 0 | 64 | 81.6 | 83 | 100 | 75 | 0.0 | 0.33 | 0.36 | 0.32 | 0.63 | 1.0 | 0.63 | 100.0 | 10.0 | 0.00 |
sec | 2000_10 | dssp | 1fft:C | 64.3 | 77 | 0 | 40 | 75 | 0 | 79 | 50.7 | 60 | 100 | 36 | 10.8 | 0.12 | 0.14 | 0.11 | 0.32 | 1.0 | 0.43 | 0.0 | 1.0 | 15.0 |
sec | 2000_10 | dssp | 1fho:A | 77.3 | 100 | 72 | 75 | 71 | 70 | 83 | 73.0 | 63 | 64 | 78 | 0.0 | 0.42 | 0.44 | 0.41 | 0.82 | 0.58 | 0.54 | 100.0 | 5.0 | 0.00 |
sec | 2000_10 | dssp | 1fiq:B | 71.1 | 83 | 56 | 69 | 63 | 80 | 75 | 74.1 | 82 | 68 | 70 | 6.2 | 0.28 | 0.28 | 0.29 | 0.56 | 0.59 | 0.53 | 0.0 | 10.0 | 6.0 |
sec | 2000_10 | dssp | 1fiq:C | 77.2 | 73 | 68 | 84 | 90 | 77 | 70 | 70.0 | 72 | 69 | 68 | 0.5 | 0.41 | 0.40 | 0.42 | 0.74 | 0.64 | 0.56 | 0.0 | 6.0 | 2.0 |
sec | 2000_10 | dssp | 1fl4:A | 76.6 | 76 | 72 | 77 | 68 | 64 | 86 | 82.0 | 78 | 82 | 83 | 5.2 | 0.34 | 0.35 | 0.33 | 0.60 | 0.61 | 0.64 | 100.0 | 3.0 | 2.0 |
sec | 2000_10 | dssp | 1fq0:A | 85.9 | 93 | 66 | 85 | 92 | 82 | 80 | 88.6 | 97 | 72 | 86 | 0.0 | 0.57 | 0.57 | 0.59 | 0.87 | 0.69 | 0.71 | 100.0 | 0.00 | 3.0 |
sec | 2000_10 | dssp | 1fqy:A | 61.1 | 56 | 0 | 68 | 85 | 0 | 78 | 68.9 | 64 | 100 | 78 | 19.9 | 0.22 | 0.28 | 0.17 | 0.40 | 1.0 | 0.58 | 0.0 | 21.0 | 26.0 |
sec | 2000_10 | dssp | 1fu9:A | 80.6 | 100 | 0 | 86 | 76 | 0 | 82 | 66.3 | 100 | 0 | 63 | 0.0 | 0.54 | 0.46 | 0.63 | 0.82 | 1.0 | 0.58 | 100.0 | 8.0 | 11.0 |
sec | 2000_10 | dssp | 1fwq:A | 68.7 | 0 | 48 | 81 | 0 | 51 | 76 | 48.4 | 0 | 41 | 53 | 2.6 | 0.11 | 0.10 | 0.13 | 1.0 | 0.27 | 0.35 | 100.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1fxj:A | 78.3 | 71 | 81 | 80 | 89 | 79 | 71 | 75.8 | 80 | 67 | 80 | 0.6 | 0.43 | 0.43 | 0.44 | 0.73 | 0.72 | 0.57 | 100.0 | 5.0 | 0.00 |
sec | 2000_10 | dssp | 1gd2:E | 90.8 | 92 | 0 | 75 | 96 | 0 | 60 | 82.8 | 85 | 100 | 60 | 0.0 | 0.34 | 0.37 | 0.32 | 0.61 | 1.0 | 0.61 | 100.0 | 3.0 | 0.00 |
sec | 2000_10 | dssp | 1qmu:A | 80.3 | 77 | 74 | 85 | 92 | 77 | 75 | 83.6 | 83 | 82 | 84 | 0.5 | 0.46 | 0.45 | 0.47 | 0.79 | 0.68 | 0.62 | 100.0 | 4.0 | 1.0 |
sec | 2000_10 | dssp | 1qmy:A | 66.0 | 58 | 55 | 77 | 71 | 56 | 68 | 65.6 | 69 | 56 | 67 | 7.6 | 0.19 | 0.19 | 0.19 | 0.51 | 0.40 | 0.47 | 100.0 | 5.0 | 0.00 |
sec | 2000_10 | dssp | 1qnr:A | 66.3 | 56 | 63 | 75 | 91 | 44 | 65 | 57.8 | 62 | 56 | 54 | 5.2 | 0.24 | 0.25 | 0.25 | 0.61 | 0.41 | 0.43 | 100.0 | 14.0 | 7.0 |
sec | 2000_10 | dssp | THIS_month:psum | 73.0 | 64 | 45 | 76 | 67 | 50 | 70 | 67.3 | 66.8 | 69.6 | 64.9 | 3.6 | 0.29 | 0.29 | 0.29 | 0.63 | 0.67 | 0.49 | 72 | 7.0 | 6.4 |
sec | 2000_10 | dssp | ALL_proteins:psum | 74.6 | 71 | 50 | 73 | 72 | 54 | 72 | 70.1 | 73.5 | 68.7 | 65.2 | 2.8 | 0.29 | 0.29 | 0.30 | 0.64 | 0.62 | 0.52 | 7822.5 | 6.4 | 5.0 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.0 | 26 | 30 | 14 | 26 | 32 | 11 | 13.5 | 23.7 | 25.7 | 16.3 | 3.7 | 0.53 | 0.60 | 0.46 | 0.20 | 0.25 | 0.14 | 7760.1 | 8.3 | 6.0 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.57 | 1 | 1 | 0.90 | 1 | 2 | 0.74 | 0.86 | 1.5 | 1.6 | 1.0 | 0.24 | 0.03 | 0.03 | 0.03 | 0.01 | 0.01 | 0.00 | 492.7 | 0.52 | 0.38 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |