METHOD about: | ../../doc/explain_method2.html#PX_about_PHDpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 248 |
NWEEKS : | 36 |
NOTE 1 : | here ALL results obtained for phdpsi in month 2000_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_06 | dssp | ALL_proteins:psum | 74.6 | 71 | 50 | 73 | 72 | 54 | 72 | 70.1 | 73.5 | 68.7 | 65.2 | 2.8 | 0.29 | 0.29 | 0.30 | 0.64 | 0.62 | 0.52 | 7822.5 | 6.4 | 5.0 |
sec | 2000_06 | dssp | ALL_proteins:sig | 9.0 | 26 | 30 | 14 | 26 | 32 | 11 | 13.5 | 23.7 | 25.7 | 16.3 | 3.7 | 0.53 | 0.60 | 0.46 | 0.20 | 0.25 | 0.14 | 7760.1 | 8.3 | 6.0 |
sec | 2000_06 | dssp | ALL_proteins:errsig | 0.57 | 1 | 1 | 0.90 | 1 | 2 | 0.74 | 0.86 | 1.5 | 1.6 | 1.0 | 0.24 | 0.03 | 0.03 | 0.03 | 0.01 | 0.01 | 0.00 | 492.7 | 0.52 | 0.38 |
sec | 2000_06 | dssp | THIS_month:psum | 75.0 | 77 | 61 | 75 | 84 | 63 | 71 | 73.3 | 78.9 | 72.8 | 67.9 | 1.6 | 0.36 | 0.37 | 0.36 | 0.69 | 0.61 | 0.52 | 100 | 2.2 | 3 |
sec | 2000_06 | dssp | 1e01:A | 85.4 | 86 | 80 | 86 | 100 | 66 | 86 | 92.9 | 100 | 85 | 91 | 2.0 | 0.58 | 0.59 | 0.58 | 0.90 | 0.65 | 0.74 | 100.0 | 4.0 | 4.0 |
sec | 2000_06 | dssp | 1e0g:A | 75.0 | 72 | 75 | 77 | 100 | 50 | 73 | 75.6 | 83 | 78 | 68 | 2.0 | 0.42 | 0.43 | 0.42 | 0.78 | 0.51 | 0.54 | 100.0 | 10.0 | 8.0 |
sec | 2000_06 | dssp | 1e1d:A | 81.4 | 85 | 55 | 84 | 89 | 66 | 75 | 72.4 | 75 | 52 | 73 | 2.1 | 0.40 | 0.40 | 0.41 | 0.75 | 0.55 | 0.66 | 100.0 | 2.0 | 1.0 |
sec | 2000_06 | dssp | 1ef4:A | 78.2 | 89 | 0 | 66 | 89 | 0 | 85 | 72.6 | 100 | 100 | 53 | 0.0 | 0.45 | 0.52 | 0.38 | 0.78 | 1.0 | 0.57 | 100.0 | 0.00 | 10.0 |
sec | 2000_06 | dssp | 1ekj:A | 82.9 | 82 | 91 | 79 | 89 | 83 | 75 | 90.8 | 89 | 100 | 88 | 0.0 | 0.51 | 0.52 | 0.51 | 0.74 | 0.84 | 0.63 | 100.0 | 3.0 | 1.0 |
sec | 2000_06 | dssp | 1eul:A | 71.4 | 74 | 45 | 77 | 81 | 45 | 71 | 67.2 | 78 | 47 | 63 | 6.6 | 0.25 | 0.26 | 0.26 | 0.62 | 0.35 | 0.55 | 100.0 | 3.0 | 0.00 |
sec | 2000_06 | dssp | 1euv:A | 80.9 | 87 | 69 | 78 | 87 | 75 | 76 | 81.0 | 91 | 67 | 75 | 1.3 | 0.45 | 0.45 | 0.46 | 0.77 | 0.66 | 0.62 | 100.0 | 0.00 | 1.0 |
sec | 2000_06 | dssp | 1f15:A | 77.1 | 77 | 69 | 81 | 82 | 73 | 78 | 81.5 | 77 | 76 | 85 | 0.0 | 0.36 | 0.36 | 0.37 | 0.77 | 0.57 | 0.53 | 100.0 | 0.00 | 1.0 |
sec | 2000_06 | dssp | 1qcn:A | 67.3 | 62 | 49 | 79 | 74 | 63 | 66 | 58.6 | 63 | 49 | 61 | 3.1 | 0.21 | 0.21 | 0.22 | 0.58 | 0.42 | 0.41 | 100.0 | 3.0 | 6.0 |
sec | 2000_06 | dssp | 1qco:A | 69.2 | 64 | 48 | 83 | 79 | 65 | 67 | 61.0 | 60 | 55 | 63 | 2.8 | 0.24 | 0.23 | 0.26 | 0.63 | 0.43 | 0.45 | 100.0 | 4.0 | 6.0 |
sec | 2000_06 | dssp | 1qhn:A | 73.0 | 80 | 72 | 64 | 80 | 75 | 63 | 71.3 | 75 | 82 | 60 | 0.5 | 0.35 | 0.35 | 0.35 | 0.63 | 0.68 | 0.42 | 100.0 | 0.00 | 0.00 |
sec | 2000_06 | dssp | 1qhs:A | 70.2 | 76 | 72 | 61 | 75 | 75 | 61 | 70.2 | 76 | 82 | 56 | 0.5 | 0.31 | 0.32 | 0.32 | 0.57 | 0.68 | 0.37 | 100.0 | 0.00 | 0.00 |
sec | 2000_06 | dssp | 1qhx:A | 71.9 | 78 | 72 | 63 | 78 | 75 | 62 | 70.5 | 75 | 82 | 58 | 0.5 | 0.33 | 0.34 | 0.34 | 0.61 | 0.68 | 0.41 | 100.0 | 0.00 | 0.00 |
sec | 2000_06 | dssp | 1qhy:A | 71.3 | 76 | 72 | 63 | 79 | 75 | 59 | 70.8 | 75 | 82 | 58 | 0.5 | 0.33 | 0.33 | 0.33 | 0.60 | 0.68 | 0.39 | 100.0 | 1.0 | 0.00 |
sec | 2000_06 | dssp | 1qqj:A | 70.9 | 69 | 47 | 85 | 84 | 66 | 68 | 64.4 | 67 | 55 | 67 | 2.8 | 0.28 | 0.27 | 0.30 | 0.69 | 0.42 | 0.49 | 100.0 | 4.0 | 7.0 |
sec | 2000_06 | dssp | THIS_month:psum | 75.0 | 77 | 61 | 75 | 84 | 63 | 71 | 73.3 | 78.9 | 72.8 | 67.9 | 1.6 | 0.36 | 0.37 | 0.36 | 0.69 | 0.61 | 0.52 | 100 | 2.2 | 3 |
sec | 2000_06 | dssp | ALL_proteins:psum | 74.6 | 71 | 50 | 73 | 72 | 54 | 72 | 70.1 | 73.5 | 68.7 | 65.2 | 2.8 | 0.29 | 0.29 | 0.30 | 0.64 | 0.62 | 0.52 | 7822.5 | 6.4 | 5.0 |
sec | 2000_06 | dssp | ALL_proteins:sig | 9.0 | 26 | 30 | 14 | 26 | 32 | 11 | 13.5 | 23.7 | 25.7 | 16.3 | 3.7 | 0.53 | 0.60 | 0.46 | 0.20 | 0.25 | 0.14 | 7760.1 | 8.3 | 6.0 |
sec | 2000_06 | dssp | ALL_proteins:errsig | 0.57 | 1 | 1 | 0.90 | 1 | 2 | 0.74 | 0.86 | 1.5 | 1.6 | 1.0 | 0.24 | 0.03 | 0.03 | 0.03 | 0.01 | 0.01 | 0.00 | 492.7 | 0.52 | 0.38 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |