METHOD about: | ../../doc/explain_method2.html#PX_about_PHDpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 248 |
NWEEKS : | 36 |
NOTE 1 : | here ALL results obtained for phdpsi in month 2000_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_05 | dssp | ALL_proteins:psum | 74.6 | 71 | 50 | 73 | 72 | 54 | 72 | 70.1 | 73.5 | 68.7 | 65.2 | 2.8 | 0.29 | 0.29 | 0.30 | 0.64 | 0.62 | 0.52 | 7822.5 | 6.4 | 5.0 |
sec | 2000_05 | dssp | ALL_proteins:sig | 9.0 | 26 | 30 | 14 | 26 | 32 | 11 | 13.5 | 23.7 | 25.7 | 16.3 | 3.7 | 0.53 | 0.60 | 0.46 | 0.20 | 0.25 | 0.14 | 7760.1 | 8.3 | 6.0 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.57 | 1 | 1 | 0.90 | 1 | 2 | 0.74 | 0.86 | 1.5 | 1.6 | 1.0 | 0.24 | 0.03 | 0.03 | 0.03 | 0.01 | 0.01 | 0.00 | 492.7 | 0.52 | 0.38 |
sec | 2000_05 | dssp | THIS_month:psum | 73.3 | 80 | 39 | 76 | 72 | 45 | 73 | 74.5 | 81.1 | 67.4 | 69.8 | 5 | 0.34 | 0.35 | 0.33 | 0.58 | 0.59 | 0.57 | 70.5 | 10.1 | 5.2 |
sec | 2000_05 | dssp | 1d9e:A | 82.3 | 87 | 76 | 80 | 85 | 84 | 77 | 84.2 | 90 | 76 | 81 | 1.5 | 0.48 | 0.48 | 0.48 | 0.76 | 0.75 | 0.65 | 0.0 | 0.00 | 1.0 |
sec | 2000_05 | dssp | 1dj0:A | 83.3 | 87 | 75 | 85 | 81 | 91 | 80 | 85.4 | 89 | 91 | 80 | 0.0 | 0.52 | 0.52 | 0.53 | 0.79 | 0.77 | 0.66 | 100.0 | 1.0 | 4.0 |
sec | 2000_05 | dssp | 1dli:A | 84.6 | 87 | 72 | 85 | 92 | 72 | 80 | 84.0 | 80 | 76 | 91 | 0.9 | 0.50 | 0.51 | 0.51 | 0.81 | 0.67 | 0.70 | 100.0 | 2.0 | 0.00 |
sec | 2000_05 | dssp | 1dlj:A | 83.8 | 87 | 74 | 83 | 90 | 71 | 81 | 83.6 | 79 | 80 | 89 | 0.9 | 0.49 | 0.49 | 0.49 | 0.80 | 0.68 | 0.69 | 100.0 | 1.0 | 0.00 |
sec | 2000_05 | dssp | 1dny:A | 84.2 | 90 | 0 | 76 | 82 | 0 | 89 | 74.4 | 95 | 100 | 57 | 1.3 | 0.39 | 0.41 | 0.39 | 0.68 | 1.0 | 0.70 | 100.0 | 5.0 | 1.0 |
sec | 2000_05 | dssp | 1dp5:B | 53.3 | 50 | 0 | 100 | 100 | 0 | 16 | 72.2 | 75 | 100 | 33 | 13.3 | 0.16 | 0.26 | 0.07 | 0.25 | 1.0 | 0.32 | 100.0 | 46.0 | 13.0 |
sec | 2000_05 | dssp | 1du2:A | 56.6 | 100 | 0 | 32 | 45 | 0 | 100 | 49.5 | 76 | 100 | 37 | 0.0 | 0.18 | 0.17 | 0.21 | 0.38 | 1.0 | 0.38 | 0.0 | 43.0 | 0.00 |
sec | 2000_05 | dssp | 1e0b:A | 55.0 | 56 | 33 | 73 | 40 | 53 | 68 | 65.0 | 56 | 41 | 92 | 21.6 | 0.13 | 0.13 | 0.13 | 0.24 | 0.20 | 0.51 | 100.0 | 9.0 | 13.0 |
sec | 2000_05 | dssp | 1edu:A | 89.3 | 94 | 0 | 80 | 94 | 0 | 80 | 84.7 | 94 | 0 | 65 | 0.0 | 0.50 | 0.51 | 0.51 | 0.80 | -0.01 | 0.72 | 100.0 | 0.00 | 0.00 |
sec | 2000_05 | dssp | 1ef1:A | 80.6 | 90 | 65 | 81 | 81 | 85 | 76 | 84.1 | 91 | 77 | 80 | 3.4 | 0.44 | 0.44 | 0.45 | 0.76 | 0.68 | 0.66 | 0.0 | 3.0 | 6.0 |
sec | 2000_05 | dssp | 1ef1:C | 80.0 | 84 | 0 | 76 | 82 | 0 | 78 | 84.3 | 90 | 0 | 78 | 1.1 | 0.30 | 0.30 | 0.30 | 0.61 | -0.01 | 0.61 | 100.0 | 1.0 | 0.00 |
sec | 2000_05 | dssp | 1ej3:A | 85.6 | 87 | 25 | 89 | 97 | 22 | 77 | 91.9 | 97 | 29 | 89 | 1.6 | 0.49 | 0.51 | 0.48 | 0.81 | 0.19 | 0.73 | 100.0 | 5.0 | 0.00 |
sec | 2000_05 | dssp | 1em2:A | 74.3 | 96 | 55 | 76 | 70 | 88 | 69 | 76.4 | 93 | 69 | 69 | 6.0 | 0.39 | 0.39 | 0.40 | 0.74 | 0.58 | 0.57 | 0.0 | 10.0 | 14.0 |
sec | 2000_05 | dssp | 1eo0:A | 59.7 | 52 | 0 | 75 | 82 | 0 | 58 | 64.1 | 57 | 100 | 79 | 15.5 | 0.18 | 0.23 | 0.14 | 0.25 | 1.0 | 0.47 | 0.0 | 24.0 | 15.0 |
sec | 2000_05 | dssp | 1eq6:A | 59.3 | 52 | 49 | 75 | 47 | 87 | 53 | 56.3 | 62 | 61 | 48 | 9.5 | 0.17 | 0.17 | 0.18 | 0.30 | 0.53 | 0.38 | 100.0 | 2.0 | 16.0 |
sec | 2000_05 | dssp | 1ewi:A | 60.5 | 76 | 67 | 54 | 30 | 54 | 86 | 48.3 | 55 | 70 | 42 | 5.2 | 0.18 | 0.20 | 0.17 | 0.37 | 0.45 | 0.39 | 100.0 | 17.0 | 6.0 |
sec | 2000_05 | dssp | 2osp:E | 74.0 | 85 | 72 | 74 | 33 | 74 | 80 | 78.1 | 100 | 76 | 78 | 3.2 | 0.24 | 0.26 | 0.23 | 0.51 | 0.51 | 0.54 | 100.0 | 4.0 | 0.00 |
sec | 2000_05 | dssp | THIS_month:psum | 73.3 | 80 | 39 | 76 | 72 | 45 | 73 | 74.5 | 81.1 | 67.4 | 69.8 | 5 | 0.34 | 0.35 | 0.33 | 0.58 | 0.59 | 0.57 | 70.5 | 10.1 | 5.2 |
sec | 2000_05 | dssp | ALL_proteins:psum | 74.6 | 71 | 50 | 73 | 72 | 54 | 72 | 70.1 | 73.5 | 68.7 | 65.2 | 2.8 | 0.29 | 0.29 | 0.30 | 0.64 | 0.62 | 0.52 | 7822.5 | 6.4 | 5.0 |
sec | 2000_05 | dssp | ALL_proteins:sig | 9.0 | 26 | 30 | 14 | 26 | 32 | 11 | 13.5 | 23.7 | 25.7 | 16.3 | 3.7 | 0.53 | 0.60 | 0.46 | 0.20 | 0.25 | 0.14 | 7760.1 | 8.3 | 6.0 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.57 | 1 | 1 | 0.90 | 1 | 2 | 0.74 | 0.86 | 1.5 | 1.6 | 1.0 | 0.24 | 0.03 | 0.03 | 0.03 | 0.01 | 0.01 | 0.00 | 492.7 | 0.52 | 0.38 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |