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EVA summary for category sec (Pairwise)

Contents

About secondary structure prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 448 93 method/index.html
APSSP   00method/apssp.html
APSSP2   36678method/apssp2.html
JPred   16729method/jpred.html
JUFO   13338method/jufo.html
PHD   37378method/phd.html
PHDpsi   37078method/phdpsi.html
PROF_king   37586method/prof_king.html
PROFsec   37378method/profsec.html
Prospect   28674method/prospect.html
PSIpred   37486method/psipred.html
PSSP   11method/pssp.html
SABLE   8723method/sable.html
SABLE2   306method/sable2.html
SAM-T99sec   32986method/samt99_sec.html
SCRATCH (SSpro3)   16842method/scratch.html
SSpro1   11method/sspro1.html
SSpro2   25748method/sspro2.html
SSpro4   196method/sspro4.html
yaspin   4010method/yaspin.html

TABLES

DISCLAIMER Any final ranking list will be frustrated in the sense that method i assessed to be better than method j in the direct pairwise comparison may be positioned worse than method j in the final ranking because of the impact of the pairwise comparisons with other methods, based on different sets of common models.

 


Comparison of secondary structure prediction methods (pairwise)


Analysis of Q3 score for Secondary Structure Prediction:
PSIpredSAM-T99secPROFsecSABLE2SCRATCH (SSpro3)SABLESSpro1SSpro2APSSP2JPredPHDpsiPROF_kingPHDProspectAPSSPPSSPJUFO
1. PSIpred -0.01 ± 7.93 [ 277] 0.97 ± 8.87 [ 323] 3.16 ± 5.77 [ 30] 1.10 ± 7.84 [ 126] 2.28 ± 7.40 [ 72]? 1.30 ± 7.93 [ 232] 1.40 ± 5.73 [ 317] 2.95 ± 7.68 [ 151] 3.45 ± 9.75 [ 320] 3.60 ± 9.23 [ 322] 5.01 ± 10.61 [ 323] 4.13 ± 11.42 [ 242] 7.45 ± 10.44 [ 210]? 7.26 ± 10.49 [ 98]
2. SAM-T99sec 0.01 ± 7.93 [ 277] 0.53 ± 8.63 [ 274] 0.58 ± 8.92 [ 30] 0.97 ± 7.20 [ 153] 1.73 ± 7.89 [ 84]? 0.89 ± 8.04 [ 161] 1.37 ± 8.40 [ 258] 2.04 ± 7.87 [ 108] 2.66 ± 8.97 [ 272] 3.56 ± 8.96 [ 278] 4.04 ± 10.08 [ 274] 4.78 ± 10.64 [ 207] 6.72 ± 10.70 [ 146]? 7.12 ± 9.83 [ 122]
3. PROFsec -0.97 ± 8.87 [ 323] -0.53 ± 8.63 [ 274] 1.00 ± 13.89 [ 26] -0.66 ± 9.73 [ 163] -0.41 ± 11.11 [ 80]? 1.05 ± 7.26 [ 194] 0.59 ± 9.74 [ 300] 3.10 ± 7.79 [ 129] 2.25 ± 6.74 [ 369] 2.60 ± 9.07 [ 318] 3.61 ± 7.84 [ 372] 3.34 ± 11.59 [ 237] 6.90 ± 10.02 [ 176]? 4.89 ± 10.73 [ 132]
4. SABLE2 -3.16 ± 5.77 [ 30] -0.58 ± 8.92 [ 30] -1.00 ± 13.89 [ 26] 0.32 ± 10.52 [ 30] 1.34 ± 7.87 [ 30]?? 1.91 ± 9.95 [ 30]? 3.06 ± 15.20 [ 26] 6.46 ± 17.44 [ 29] 3.06 ± 15.20 [ 26] 11.49 ± 19.09 [ 24]?? 8.43 ± 14.48 [ 19]
5. SCRATCH (SSpro3) -1.10 ± 7.84 [ 126] -0.97 ± 7.20 [ 153] 0.66 ± 9.73 [ 163] -0.32 ± 10.52 [ 30] 0.77 ± 8.70 [ 78]?? 0.75 ± 7.68 [ 119]? 2.72 ± 10.31 [ 163] 3.57 ± 9.12 [ 158] 3.13 ± 10.74 [ 163] 4.58 ± 13.17 [ 124]?? 5.98 ± 10.18 [ 126]
6. SABLE -2.28 ± 7.40 [ 72] -1.73 ± 7.89 [ 84] 0.41 ± 11.11 [ 80] -1.34 ± 7.87 [ 30] -0.77 ± 8.70 [ 78]?? 0.25 ± 9.27 [ 77]? 2.52 ± 11.49 [ 79] 5.08 ± 12.39 [ 78] 3.23 ± 11.92 [ 80] 5.24 ± 13.28 [ 61]?? 7.12 ± 11.38 [ 69]
7. SSpro1????????????????
8. SSpro2 -1.30 ± 7.93 [ 232] -0.89 ± 8.04 [ 161] -1.05 ± 7.26 [ 194]???? -0.02 ± 7.22 [ 231] 1.74 ± 7.35 [ 166] 1.40 ± 7.75 [ 192] 1.11 ± 7.19 [ 204] 3.61 ± 9.30 [ 194] 1.94 ± 8.98 [ 150] 5.95 ± 9.61 [ 233]??
9. APSSP2 -1.40 ± 5.73 [ 317] -1.37 ± 8.40 [ 258] -0.59 ± 9.74 [ 300] -1.91 ± 9.95 [ 30] -0.75 ± 7.68 [ 119] -0.25 ± 9.27 [ 77]? 0.02 ± 7.22 [ 231] 1.85 ± 6.86 [ 144] 1.76 ± 10.35 [ 297] 2.18 ± 9.06 [ 315] 2.91 ± 11.15 [ 300] 3.64 ± 11.89 [ 246] 6.21 ± 8.97 [ 210]? 5.94 ± 9.99 [ 95]
10. JPred -2.95 ± 7.68 [ 151] -2.04 ± 7.87 [ 108] -3.10 ± 7.79 [ 129]???? -1.74 ± 7.35 [ 166] -1.85 ± 6.86 [ 144] -0.81 ± 8.05 [ 128] -0.56 ± 7.08 [ 123] 2.68 ± 9.89 [ 129] 1.77 ± 9.86 [ 88] 4.29 ± 8.18 [ 165]??
11. PHDpsi -3.45 ± 9.75 [ 320] -2.66 ± 8.97 [ 272] -2.25 ± 6.74 [ 369] -3.06 ± 15.20 [ 26] -2.72 ± 10.31 [ 163] -2.52 ± 11.49 [ 79]? -1.40 ± 7.75 [ 192] -1.76 ± 10.35 [ 297] 0.81 ± 8.05 [ 128] 0.29 ± 9.09 [ 315] 1.28 ± 5.10 [ 369] 1.16 ± 11.55 [ 234] 4.33 ± 9.89 [ 174]? 2.95 ± 9.07 [ 131]
12. PROF_king -3.60 ± 9.23 [ 322] -3.56 ± 8.96 [ 278] -2.60 ± 9.07 [ 318] -6.46 ± 17.44 [ 29] -3.57 ± 9.12 [ 158] -5.08 ± 12.39 [ 78]? -1.11 ± 7.19 [ 204] -2.18 ± 9.06 [ 315] 0.56 ± 7.08 [ 123] -0.29 ± 9.09 [ 315] 0.73 ± 9.67 [ 318] 0.49 ± 10.95 [ 264] 5.61 ± 9.21 [ 181]? 1.75 ± 9.57 [ 126]
13. PHD -5.01 ± 10.61 [ 323] -4.04 ± 10.08 [ 274] -3.61 ± 7.84 [ 372] -3.06 ± 15.20 [ 26] -3.13 ± 10.74 [ 163] -3.23 ± 11.92 [ 80]? -3.61 ± 9.30 [ 194] -2.91 ± 11.15 [ 300] -2.68 ± 9.89 [ 129] -1.28 ± 5.10 [ 369] -0.73 ± 9.67 [ 318] 0.06 ± 12.32 [ 238] 1.94 ± 9.91 [ 176]? 2.64 ± 9.25 [ 132]
14. Prospect -4.13 ± 11.42 [ 242] -4.78 ± 10.64 [ 207] -3.34 ± 11.59 [ 237]-11.49 ± 19.09 [ 24] -4.58 ± 13.17 [ 124] -5.24 ± 13.28 [ 61]? -1.94 ± 8.98 [ 150] -3.64 ± 11.89 [ 246] -1.77 ± 9.86 [ 88] -1.16 ± 11.55 [ 234] -0.49 ± 10.95 [ 264] -0.06 ± 12.32 [ 238] 3.98 ± 12.03 [ 132]? 0.82 ± 12.23 [ 114]
15. APSSP -7.45 ± 10.44 [ 210] -6.72 ± 10.70 [ 146] -6.90 ± 10.02 [ 176]???? -5.95 ± 9.61 [ 233] -6.21 ± 8.97 [ 210] -4.29 ± 8.18 [ 165] -4.33 ± 9.89 [ 174] -5.61 ± 9.21 [ 181] -1.94 ± 9.91 [ 176] -3.98 ± 12.03 [ 132]??
16. PSSP????????????????
17. JUFO -7.26 ± 10.49 [ 98] -7.12 ± 9.83 [ 122] -4.89 ± 10.73 [ 132] -8.43 ± 14.48 [ 19] -5.98 ± 10.18 [ 126] -7.12 ± 11.38 [ 69]?? -5.94 ± 9.99 [ 95]? -2.95 ± 9.07 [ 131] -1.75 ± 9.57 [ 126] -2.64 ± 9.25 [ 132] -0.82 ± 12.23 [ 114]??

Analysis of sov score for Secondary Structure Prediction:
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