METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro4 |
METHOD url: | SSpro4 |
TYPE : | sec |
NPROT : | 19 |
NWEEKS : | 6 |
NOTE 1 : | here ALL results obtained for SSpro4 in month 2004_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_04 | dssp | ALL_proteins:psum | 78.0 | 84 | 84 | 72 | 65 | 74 | 77 | 73.6 | 82.5 | 78.1 | 69.1 | 2.5 | 0.42 | 0.43 | 0.42 | 0.72 | 0.63 | 0.60 | 8947.3 | 7.9 | 5.1 |
sec | 2004_04 | dssp | ALL_proteins:sig | 14.4 | 36 | 35 | 53 | 51 | 16 | 15 | 20.1 | 24.9 | 30.7 | 19.6 | 5.0 | 0.21 | 0.22 | 0.21 | 0.29 | 0.38 | 0.22 | 9100.6 | 5.7 | 6.8 |
sec | 2004_04 | dssp | ALL_proteins:errsig | 3.3 | 8 | 8 | 12 | 11 | 3 | 3 | 4.6 | 5.7 | 7.0 | 4.5 | 1.1 | 0.04 | 0.05 | 0.04 | 0.06 | 0.08 | 0.05 | 2087.8 | 1.3 | 1.5 |
sec | 2004_04 | dssp | THIS_month:psum | 84.1 | 70 | 73 | 53 | 58 | 84 | 86 | 81.0 | 100 | 85.2 | 75 | 0 | 0.55 | 0.56 | 0.53 | 0.94 | 0.73 | 0.67 | 100 | 2.5 | 8.7 |
sec | 2004_04 | dssp | 1nei:A | 86.7 | 90 | 100 | 75 | 75 | 89 | 83 | 96.9 | 100 | 93 | 96 | 0.0 | 0.62 | 0.62 | 0.63 | 0.92 | 0.68 | 0.73 | 100.0 | 3.0 | 0.00 |
sec | 2004_04 | dssp | 1pv0:A | 87.0 | 100 | 93 | 0 | 0 | 68 | 100 | 73.7 | 100 | 100 | 50 | 0.0 | 0.68 | 0.77 | 0.60 | 0.91 | 1.0 | 0.74 | 100.0 | 4.0 | 8.0 |
sec | 2004_04 | dssp | 1rk8:C | 72.7 | 0 | 0 | 38 | 83 | 95 | 70 | 57.0 | 100 | 48 | 62 | 0.0 | 0.16 | 0.14 | 0.19 | 1.0 | 0.42 | 0.42 | 100.0 | 0.00 | 21.0 |
sec | 2004_04 | dssp | 1rli:A | 90.0 | 90 | 100 | 100 | 77 | 84 | 91 | 96.7 | 100 | 100 | 92 | 0.0 | 0.73 | 0.74 | 0.73 | 0.92 | 0.84 | 0.79 | 100.0 | 3.0 | 6.0 |
sec | 2004_04 | dssp | THIS_month:psum | 84.1 | 70 | 73 | 53 | 58 | 84 | 86 | 81.0 | 100 | 85.2 | 75 | 0 | 0.55 | 0.56 | 0.53 | 0.94 | 0.73 | 0.67 | 100 | 2.5 | 8.7 |
sec | 2004_04 | dssp | ALL_proteins:psum | 78.0 | 84 | 84 | 72 | 65 | 74 | 77 | 73.6 | 82.5 | 78.1 | 69.1 | 2.5 | 0.42 | 0.43 | 0.42 | 0.72 | 0.63 | 0.60 | 8947.3 | 7.9 | 5.1 |
sec | 2004_04 | dssp | ALL_proteins:sig | 14.4 | 36 | 35 | 53 | 51 | 16 | 15 | 20.1 | 24.9 | 30.7 | 19.6 | 5.0 | 0.21 | 0.22 | 0.21 | 0.29 | 0.38 | 0.22 | 9100.6 | 5.7 | 6.8 |
sec | 2004_04 | dssp | ALL_proteins:errsig | 3.3 | 8 | 8 | 12 | 11 | 3 | 3 | 4.6 | 5.7 | 7.0 | 4.5 | 1.1 | 0.04 | 0.05 | 0.04 | 0.06 | 0.08 | 0.05 | 2087.8 | 1.3 | 1.5 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |