METHOD about: | ../../../doc/explain_methods.html#PX_about_sable2 |
METHOD url: | SABLE2 |
TYPE : | sec |
NPROT : | 30 |
NWEEKS : | 6 |
NOTE 1 : | here ALL results obtained for SABLE2 in month 2004_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_04 | dssp | ALL_proteins:psum | 76.9 | 89 | 80 | 70 | 65 | 66 | 78 | 73.2 | 85.8 | 79.9 | 59.4 | 2.6 | 0.42 | 0.43 | 0.40 | 0.71 | 0.61 | 0.56 | 9333.3 | 9.5 | 5.4 |
sec | 2004_04 | dssp | ALL_proteins:sig | 14.2 | 29 | 28 | 58 | 54 | 24 | 24 | 21.3 | 22.5 | 33.3 | 27.2 | 4.7 | 0.21 | 0.24 | 0.20 | 0.25 | 0.39 | 0.26 | 9397.9 | 10.0 | 6.3 |
sec | 2004_04 | dssp | ALL_proteins:errsig | 2.5 | 5 | 5 | 10 | 9 | 4 | 4 | 3.8 | 4.1 | 6.0 | 4.9 | 0.86 | 0.04 | 0.04 | 0.03 | 0.04 | 0.07 | 0.04 | 1715.8 | 1.8 | 1.1 |
sec | 2004_04 | dssp | THIS_month:psum | 81.1 | 66 | 69 | 51 | 56 | 81 | 82 | 75.4 | 96.2 | 82.7 | 67.5 | 0.82 | 0.46 | 0.48 | 0.45 | 0.88 | 0.71 | 0.62 | 100 | 2.2 | 9.2 |
sec | 2004_04 | dssp | 1nei:A | 81.7 | 80 | 100 | 83 | 58 | 82 | 85 | 80.7 | 85 | 100 | 72 | 3.3 | 0.51 | 0.52 | 0.51 | 0.85 | 0.61 | 0.69 | 100.0 | 6.0 | 8.0 |
sec | 2004_04 | dssp | 1pv0:A | 87.0 | 96 | 96 | 0 | 0 | 73 | 93 | 75.4 | 100 | 100 | 53 | 0.0 | 0.65 | 0.74 | 0.57 | 0.91 | 1.0 | 0.73 | 100.0 | 0.00 | 8.0 |
sec | 2004_04 | dssp | 1rk8:C | 72.7 | 0 | 0 | 38 | 83 | 95 | 70 | 54.9 | 100 | 46 | 60 | 0.0 | 0.16 | 0.14 | 0.19 | 1.0 | 0.42 | 0.42 | 100.0 | 0.00 | 21.0 |
sec | 2004_04 | dssp | 1rli:A | 83.3 | 90 | 81 | 85 | 85 | 76 | 83 | 90.6 | 100 | 85 | 85 | 0.0 | 0.53 | 0.54 | 0.53 | 0.78 | 0.81 | 0.65 | 100.0 | 3.0 | 0.00 |
sec | 2004_04 | dssp | THIS_month:psum | 81.1 | 66 | 69 | 51 | 56 | 81 | 82 | 75.4 | 96.2 | 82.7 | 67.5 | 0.82 | 0.46 | 0.48 | 0.45 | 0.88 | 0.71 | 0.62 | 100 | 2.2 | 9.2 |
sec | 2004_04 | dssp | ALL_proteins:psum | 76.9 | 89 | 80 | 70 | 65 | 66 | 78 | 73.2 | 85.8 | 79.9 | 59.4 | 2.6 | 0.42 | 0.43 | 0.40 | 0.71 | 0.61 | 0.56 | 9333.3 | 9.5 | 5.4 |
sec | 2004_04 | dssp | ALL_proteins:sig | 14.2 | 29 | 28 | 58 | 54 | 24 | 24 | 21.3 | 22.5 | 33.3 | 27.2 | 4.7 | 0.21 | 0.24 | 0.20 | 0.25 | 0.39 | 0.26 | 9397.9 | 10.0 | 6.3 |
sec | 2004_04 | dssp | ALL_proteins:errsig | 2.5 | 5 | 5 | 10 | 9 | 4 | 4 | 3.8 | 4.1 | 6.0 | 4.9 | 0.86 | 0.04 | 0.04 | 0.03 | 0.04 | 0.07 | 0.04 | 1715.8 | 1.8 | 1.1 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |