METHOD about: | ../../../doc/explain_methods.html#PX_about_prospect |
METHOD url: | Prospect |
TYPE : | sec |
NPROT : | 286 |
NWEEKS : | 74 |
NOTE 1 : | here ALL results obtained for Prospect in month 2004_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_04 | dssp | ALL_proteins:psum | 71.4 | 75 | 77 | 58 | 69 | 75 | 69 | 67.9 | 71.1 | 68.0 | 66.1 | 3.5 | 0.31 | 0.31 | 0.31 | 0.63 | 0.55 | 0.50 | 8216.7 | 9.0 | 7.9 |
sec | 2004_04 | dssp | ALL_proteins:sig | 13.6 | 34 | 35 | 38 | 44 | 14 | 15 | 18.0 | 28.7 | 31.6 | 17.8 | 6.5 | 0.17 | 0.17 | 0.17 | 0.30 | 0.32 | 0.21 | 8148.9 | 10.5 | 10.0 |
sec | 2004_04 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 2 | 2 | 0.84 | 0.92 | 1.0 | 1.6 | 1.8 | 1.0 | 0.38 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 481.8 | 0.62 | 0.59 |
sec | 2004_04 | dssp | THIS_month:psum | 77.4 | 65 | 61 | 52 | 56 | 73 | 79 | 76.6 | 95 | 77.2 | 71 | 0.82 | 0.35 | 0.35 | 0.36 | 0.77 | 0.71 | 0.54 | 100 | 8.7 | 6 |
sec | 2004_04 | dssp | 1nei:A | 83.3 | 70 | 100 | 91 | 68 | 89 | 83 | 93.9 | 85 | 100 | 97 | 3.3 | 0.53 | 0.53 | 0.53 | 0.78 | 0.73 | 0.73 | 100.0 | 9.0 | 6.0 |
sec | 2004_04 | dssp | 1pv0:A | 80.4 | 92 | 78 | 0 | 0 | 63 | 85 | 85.0 | 95 | 100 | 70 | 0.0 | 0.29 | 0.28 | 0.30 | 0.59 | 1.0 | 0.59 | 100.0 | 10.0 | 0.00 |
sec | 2004_04 | dssp | 1rk8:C | 72.7 | 0 | 0 | 46 | 75 | 90 | 72 | 54.2 | 100 | 38 | 64 | 0.0 | 0.14 | 0.13 | 0.15 | 1.0 | 0.41 | 0.41 | 100.0 | 0.00 | 15.0 |
sec | 2004_04 | dssp | 1rli:A | 73.3 | 100 | 66 | 71 | 83 | 53 | 77 | 73.3 | 100 | 71 | 53 | 0.0 | 0.47 | 0.47 | 0.49 | 0.70 | 0.70 | 0.45 | 100.0 | 16.0 | 3.0 |
sec | 2004_04 | dssp | THIS_month:psum | 77.4 | 65 | 61 | 52 | 56 | 73 | 79 | 76.6 | 95 | 77.2 | 71 | 0.82 | 0.35 | 0.35 | 0.36 | 0.77 | 0.71 | 0.54 | 100 | 8.7 | 6 |
sec | 2004_04 | dssp | ALL_proteins:psum | 71.4 | 75 | 77 | 58 | 69 | 75 | 69 | 67.9 | 71.1 | 68.0 | 66.1 | 3.5 | 0.31 | 0.31 | 0.31 | 0.63 | 0.55 | 0.50 | 8216.7 | 9.0 | 7.9 |
sec | 2004_04 | dssp | ALL_proteins:sig | 13.6 | 34 | 35 | 38 | 44 | 14 | 15 | 18.0 | 28.7 | 31.6 | 17.8 | 6.5 | 0.17 | 0.17 | 0.17 | 0.30 | 0.32 | 0.21 | 8148.9 | 10.5 | 10.0 |
sec | 2004_04 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 2 | 2 | 0.84 | 0.92 | 1.0 | 1.6 | 1.8 | 1.0 | 0.38 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 481.8 | 0.62 | 0.59 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |