METHOD about: | ../../../doc/explain_methods.html#PX_about_scratch |
METHOD url: | SCRATCH (SSpro3) |
TYPE : | sec |
NPROT : | 168 |
NWEEKS : | 42 |
NOTE 1 : | here ALL results obtained for SCRATCH (SSpro3) in month 2004_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_01 | dssp | ALL_proteins:psum | 75.5 | 81 | 82 | 65 | 72 | 78 | 73 | 72.0 | 77.9 | 73.8 | 67.9 | 3.3 | 0.36 | 0.36 | 0.35 | 0.70 | 0.61 | 0.58 | 8273.8 | 7.7 | 6.3 |
sec | 2004_01 | dssp | ALL_proteins:sig | 11.3 | 35 | 34 | 41 | 46 | 15 | 15 | 16.2 | 26.3 | 27.7 | 17.3 | 6.5 | 0.16 | 0.17 | 0.16 | 0.26 | 0.30 | 0.20 | 8215.6 | 8.5 | 7.9 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 3 | 3 | 1 | 1 | 1.2 | 2.0 | 2.1 | 1.3 | 0.50 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 633.8 | 0.66 | 0.61 |
sec | 2004_01 | dssp | THIS_month:psum | 69.9 | 75 | 72 | 50 | 56 | 70 | 70 | 64.0 | 70.6 | 53 | 63.1 | 4.9 | 0.31 | 0.30 | 0.31 | 0.56 | 0.44 | 0.49 | 80 | 10.2 | 6.5 |
sec | 2004_01 | dssp | 1m36:A | 63.6 | 100 | 47 | 50 | 66 | 47 | 100 | 62.1 | 75 | 50 | 57 | 6.0 | 0.31 | 0.30 | 0.32 | 0.49 | 0.52 | 0.52 | 100.0 | 33.0 | 3.0 |
sec | 2004_01 | dssp | 1nnv:A | 61.7 | 66 | 38 | 65 | 55 | 58 | 92 | 47.8 | 66 | 69 | 39 | 12.1 | 0.21 | 0.22 | 0.20 | 0.30 | 0.48 | 0.53 | 0.0 | 16.0 | 3.0 |
sec | 2004_01 | dssp | 1p57:A | 57.1 | 27 | 25 | 52 | 85 | 77 | 56 | 63.3 | 31 | 65 | 77 | 10.7 | 0.18 | 0.18 | 0.19 | 0.07 | 0.52 | 0.38 | 100.0 | 1.0 | 16.0 |
sec | 2004_01 | dssp | 1p94:A | 67.1 | 64 | 82 | 57 | 33 | 71 | 65 | 63.5 | 73 | 35 | 60 | 5.2 | 0.20 | 0.21 | 0.20 | 0.53 | 0.36 | 0.44 | 100.0 | 10.0 | 6.0 |
sec | 2004_01 | dssp | 1pc6:A | 90.0 | 93 | 93 | 83 | 100 | 89 | 80 | 82.7 | 73 | 100 | 94 | 0.0 | 0.68 | 0.67 | 0.69 | 0.86 | 0.89 | 0.77 | 100.0 | 0.00 | 3.0 |
sec | 2004_01 | dssp | 1r2m:A | 61.4 | 100 | 100 | 25 | 53 | 81 | 55 | 60.9 | 100 | 35 | 70 | 0.0 | 0.44 | 0.41 | 0.48 | 1.0 | 0.13 | 0.27 | 100.0 | 0.00 | 21.0 |
sec | 2004_01 | dssp | 1rh5:B | 76.8 | 80 | 95 | 50 | 16 | 57 | 40 | 57.8 | 58 | 66 | 46 | 7.1 | 0.19 | 0.23 | 0.15 | 0.47 | 0.24 | 0.38 | 100.0 | 12.0 | 7.0 |
sec | 2004_01 | dssp | 1rhz:A | 82.6 | 97 | 81 | 46 | 60 | 60 | 88 | 79.2 | 99 | 38 | 55 | 0.4 | 0.39 | 0.36 | 0.42 | 0.68 | 0.51 | 0.62 | 100.0 | 12.0 | 0.00 |
sec | 2004_01 | dssp | 1rpu:A | 73.2 | 71 | 90 | 58 | 71 | 84 | 63 | 69.1 | 82 | 53 | 66 | 2.8 | 0.35 | 0.35 | 0.36 | 0.70 | 0.54 | 0.53 | 0.0 | 7.0 | 4.0 |
sec | 2004_01 | dssp | 1uhw:A | 66.1 | 53 | 75 | 23 | 30 | 85 | 67 | 54.3 | 49 | 19 | 67 | 5.5 | 0.16 | 0.16 | 0.18 | 0.47 | 0.17 | 0.44 | 100.0 | 11.0 | 2.0 |
sec | 2004_01 | dssp | THIS_month:psum | 69.9 | 75 | 72 | 50 | 56 | 70 | 70 | 64.0 | 70.6 | 53 | 63.1 | 4.9 | 0.31 | 0.30 | 0.31 | 0.56 | 0.44 | 0.49 | 80 | 10.2 | 6.5 |
sec | 2004_01 | dssp | ALL_proteins:psum | 75.5 | 81 | 82 | 65 | 72 | 78 | 73 | 72.0 | 77.9 | 73.8 | 67.9 | 3.3 | 0.36 | 0.36 | 0.35 | 0.70 | 0.61 | 0.58 | 8273.8 | 7.7 | 6.3 |
sec | 2004_01 | dssp | ALL_proteins:sig | 11.3 | 35 | 34 | 41 | 46 | 15 | 15 | 16.2 | 26.3 | 27.7 | 17.3 | 6.5 | 0.16 | 0.17 | 0.16 | 0.26 | 0.30 | 0.20 | 8215.6 | 8.5 | 7.9 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 3 | 3 | 1 | 1 | 1.2 | 2.0 | 2.1 | 1.3 | 0.50 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 633.8 | 0.66 | 0.61 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |