EVA results for 1rpu:A

DATE : 2004_01_13
TYPE : sec
NRES : 138
HEADER : RNA BINDING PROTEIN/RNA
COMPND : 2 MOLECULE: 19 KDA PROTEIN;
SOURCE : 2 ORGANISM_SCIENTIFIC: CARNATION ITALIAN RINGSPOT VIRUS;
AUTHOR : J.M.VARGASON, G.SZITTYA, J.BURGYAN, T.M.T.HALL

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,...
seq	DTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV
dssp	-HHHHHHHH------------E--------HHHHHHH------EEEEEEEE--EEEEEEEE----HHHHHHHHHHE-HHHHHHHHH--------EEEEEEEE--EEEEEEEEHHHHHHHHHHHHHHHHHHH-------
apssp2	--HH------------------E---------HHEEE---------------HHHHHHHHHH---HHHHHHHHH--------HHHHHH-------EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHHHH----HHE	-10.4	-3.6	-0.16
jufo	----------------------------------HH----------------EEHHHHHH---------------------HHHHHH----------EEEEE--EEEEE---HHHHHHHHHHHHHHHHHHH-------	-6.8	-10.2	-0.06
phd	--HHH------------EE-------------EEEE---------EEEEE--EEEEEEEEEE----HHHHHHHEEE----EHHHHHHEEEEEEEEEEEEEEE--EEEEEE--HHHHHHHHHHHHHHHHHHHH----EE	-0.3	+5.8	+0.04
phdpsi	--HHH------------EE-------------EEEE---------EEEEE--EEEEEEEEEE----HHHHHHHEEE----EHHHHHHEEEEEEEEEEEEEEE--EEEEEE--HHHHHHHHHHHHHHHHHHHH----EE	-1.8	+4.5	+0.02
prof_king	--HH----------------------------EEEE---------EE-----EEEEEEEEE------EEEEEE-------HHHHHHHH----E---EEEEEEEEEEEEE----HHHHHHHHHHHHHHHHHHH---EEE	-8.8	-10.1	-0.08
profsec	-HHHH---EE-------EE-------------EEEE--------EEEEE----EEEEEEEE----EEEHHHHH-------HHHHHHHH----EEEEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHHHHH------E	-1.7	+1.2	-0.00
prospect	-HHHHH----EE------------------HHHHH-----------------EEEEEEEEE-----HHHHHHHHH-----HHHHHH-EE-------EEEEEE--EEEEE----HHHHHHHHHHHHHHHHHH----HHH	+4.2	+4.3	+0.13
psipred	---------------------------------EEEE-------------HHHHHHHHHHH----HHHHHHHHH------HHHHHHHHH------EEEEEEEEEEEEEE---HHHHHHHHHHHHHHHHHHHH--HHHH	-14	-18.3	-0.22
sable	--------------------------------EEEEE---------H---HHHHHHHHHHH----HHHHHHHH---------HHHHHH----EEEEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHHHHH-----EE	-15.2	-19.9	-0.17
samt99_sec	--HHH---------------------------HEEE----------------EEEEEEEEE-------HHHHH-------HHHHHHHHH---EEEEEEEEEEEEEEEEE----HHHHHHHHHHHHHHHHHHH---HHH	-7.8	-10.9	-0.07
scratch	-HHHHH--------------------------EEEE-----------------EEEEEEEE----HHHHHHHH-------HHHHHHHHH------EEEEEEEEEEEEEE---HHHHHHHHHHHHHHHHHHHH----EE	-2.1	-2.3	0.00

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Jan 21, 2004
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva