METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp2 |
METHOD url: | APSSP2 |
TYPE : | sec |
NPROT : | 366 |
NWEEKS : | 78 |
NOTE 1 : | here ALL results obtained for APSSP2 in month 2004_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_01 | dssp | ALL_proteins:psum | 74.9 | 79 | 79 | 61 | 73 | 77 | 71 | 71.6 | 76.7 | 71.9 | 69.1 | 3.2 | 0.36 | 0.36 | 0.35 | 0.67 | 0.59 | 0.55 | 8606.5 | 7.6 | 6.6 |
sec | 2004_01 | dssp | ALL_proteins:sig | 11.8 | 31 | 32 | 37 | 43 | 14 | 15 | 16.7 | 24.8 | 27.4 | 17.9 | 5.3 | 0.17 | 0.17 | 0.17 | 0.24 | 0.28 | 0.18 | 8532.2 | 9.0 | 8.0 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 0.61 | 1 | 1 | 1 | 2 | 0.77 | 0.78 | 0.87 | 1.2 | 1.4 | 0.93 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 445.9 | 0.47 | 0.41 |
sec | 2004_01 | dssp | THIS_month:psum | 71.1 | 79 | 70 | 43 | 48 | 70 | 72 | 68.0 | 78.9 | 40.2 | 64.4 | 5.3 | 0.30 | 0.29 | 0.31 | 0.58 | 0.45 | 0.51 | 72.7 | 8.0 | 5.2 |
sec | 2004_01 | dssp | 1m36:A | 63.6 | 100 | 50 | 50 | 50 | 47 | 100 | 60.6 | 75 | 37 | 57 | 6.0 | 0.30 | 0.30 | 0.31 | 0.53 | 0.43 | 0.52 | 100.0 | 30.0 | 0.00 |
sec | 2004_01 | dssp | 1nnv:A | 60.7 | 66 | 39 | 56 | 52 | 60 | 87 | 44.6 | 79 | 65 | 34 | 12.1 | 0.17 | 0.18 | 0.17 | 0.31 | 0.41 | 0.50 | 0.0 | 15.0 | 1.0 |
sec | 2004_01 | dssp | 1p57:A | 60.0 | 36 | 28 | 57 | 66 | 72 | 73 | 60.9 | 28 | 57 | 78 | 15.4 | 0.16 | 0.17 | 0.16 | 0.12 | 0.44 | 0.50 | 100.0 | 5.0 | 4.0 |
sec | 2004_01 | dssp | 1p94:A | 82.9 | 89 | 91 | 42 | 60 | 84 | 77 | 86.4 | 91 | 34 | 91 | 0.0 | 0.47 | 0.46 | 0.49 | 0.81 | 0.46 | 0.65 | 100.0 | 1.0 | 2.0 |
sec | 2004_01 | dssp | 1pc6:A | 79.4 | 87 | 87 | 68 | 71 | 72 | 71 | 78.5 | 84 | 75 | 70 | 1.4 | 0.40 | 0.40 | 0.41 | 0.74 | 0.64 | 0.57 | 100.0 | 0.00 | 0.00 |
sec | 2004_01 | dssp | 1q7l:B | 70.5 | 70 | 87 | 58 | 38 | 74 | 70 | 59.5 | 65 | 46 | 57 | 6.8 | 0.29 | 0.31 | 0.29 | 0.64 | 0.37 | 0.53 | 100.0 | 9.0 | 6.0 |
sec | 2004_01 | dssp | 1r2m:A | 58.6 | 100 | 55 | 14 | 57 | 84 | 60 | 58.1 | 100 | 17 | 80 | 8.5 | 0.28 | 0.26 | 0.30 | 0.69 | 0.11 | 0.38 | 100.0 | 11.0 | 30.0 |
sec | 2004_01 | dssp | 1rh5:B | 85.7 | 93 | 93 | 0 | 0 | 57 | 44 | 88.7 | 100 | 0 | 37 | 0.0 | 0.32 | 0.30 | 0.35 | 0.60 | 1.0 | 0.42 | 100.0 | 0.00 | 3.0 |
sec | 2004_01 | dssp | 1rhz:A | 79.9 | 95 | 82 | 53 | 29 | 56 | 85 | 71.5 | 88 | 41 | 49 | 0.9 | 0.33 | 0.33 | 0.34 | 0.66 | 0.37 | 0.57 | 0.0 | 9.0 | 2.0 |
sec | 2004_01 | dssp | 1rpu:A | 64.5 | 66 | 71 | 38 | 65 | 80 | 59 | 67.7 | 76 | 30 | 83 | 7.9 | 0.18 | 0.18 | 0.19 | 0.50 | 0.38 | 0.46 | 0.0 | 2.0 | 10.0 |
sec | 2004_01 | dssp | 1uhw:A | 77.1 | 75 | 93 | 46 | 50 | 85 | 73 | 71.8 | 82 | 41 | 73 | 0.0 | 0.39 | 0.39 | 0.41 | 0.76 | 0.41 | 0.54 | 100.0 | 7.0 | 0.00 |
sec | 2004_01 | dssp | THIS_month:psum | 71.1 | 79 | 70 | 43 | 48 | 70 | 72 | 68.0 | 78.9 | 40.2 | 64.4 | 5.3 | 0.30 | 0.29 | 0.31 | 0.58 | 0.45 | 0.51 | 72.7 | 8.0 | 5.2 |
sec | 2004_01 | dssp | ALL_proteins:psum | 74.9 | 79 | 79 | 61 | 73 | 77 | 71 | 71.6 | 76.7 | 71.9 | 69.1 | 3.2 | 0.36 | 0.36 | 0.35 | 0.67 | 0.59 | 0.55 | 8606.5 | 7.6 | 6.6 |
sec | 2004_01 | dssp | ALL_proteins:sig | 11.8 | 31 | 32 | 37 | 43 | 14 | 15 | 16.7 | 24.8 | 27.4 | 17.9 | 5.3 | 0.17 | 0.17 | 0.17 | 0.24 | 0.28 | 0.18 | 8532.2 | 9.0 | 8.0 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 0.61 | 1 | 1 | 1 | 2 | 0.77 | 0.78 | 0.87 | 1.2 | 1.4 | 0.93 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 445.9 | 0.47 | 0.41 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |