ExPASy Home page Site Map Search ExPASy Contact us Proteomics tools
Hosted by NCSC USMirror sites:Canada China Korea Switzerland Taiwan
Search for

Class BioGraph 

java.lang.Object
   |
   +----java.awt.Component
           |
           +----java.awt.Container
                   |
                   +----java.awt.Panel
                           |
                           +----java.applet.Applet
                                   |
                                   +----BioGraph
public class BioGraph
extends Applet
implements Runnable

Variable Index

o aHeight
o aWidth
o BTFactor
o BTGrid
o BTLegend
o BTLog
o BTScale
o BTTolerance
o cmdPanel
o draggableCanvas
o dragPosition
key and mouse draggable canvas services
o isDragging
o isFetched
o MassAbout
o MassGraph
o MassNames
o MassTitle
o MassVector
o MassVectors
o MassZoom
o MatchLabel
o Peaks
o PeptAnnotation
o updateThread
we need a thread to update graphics, thats how games work, gee this is so cool!
o V_INTERVAL
unless you want to stall the machine, it's useful to sleep once in a while
o zBuffer
double buffer, for simplicity we paint regularly instead of repainting regions and invalidating sections
o zBufferGraphics

Constructor Index

o BioGraph()
default constructor, well, this does actually nothing, but is is considered as _correct_ to make a void constructor and a copy constructor (too lazy to do that:)

Method Index

o destroy()
o getAppletInfo()
o init()
Applet input can be a series of PeaksX (Peaks1, Peaks2, etc...) of PeptVect readable values (check PeptVect annotations) with PeaksXName for graph annotations
o keyDown(Event, int)
o mouseDown(Event, int, int)
o mouseDrag(Event, int, int)
o mouseMove(Event, int, int)
o mouseUp(Event, int, int)
o paint(Graphics)
since we do double-buffer, this should be empty
o paintAll(Graphics)
o paintComponents(Graphics)
o print(Graphics)
o printAll(Graphics)
o printComponents(Graphics)
unfortunately this does not work under Java 1.0, when run with full Java 1.1 api, printing works just fine in BioGraph
o Reshape()
o run()
o start()
o stop()
o Update()
o update(Graphics)
o zzBack(Graphics)
o zzDynamic()
dynamic painting of each active or passive element, such as vectors and text
o zzOptions()
adjust options at every loop
o zzStatic()
static painting

Variables

o isDragging 
 private boolean isDragging
o isFetched 
 private boolean isFetched
o zBuffer 
 private Image zBuffer
double buffer, for simplicity we paint regularly instead of repainting regions and invalidating sections

o zBufferGraphics 
 private Graphics zBufferGraphics
o aWidth 
 public static int aWidth
o aHeight 
 public static int aHeight
o BTGrid 
 private Checkbox BTGrid
o BTFactor 
 private Checkbox BTFactor
o BTLog 
 private Checkbox BTLog
o BTScale 
 private Checkbox BTScale
o BTLegend 
 private Checkbox BTLegend
o BTTolerance 
 private Choice BTTolerance
o MassGraph 
 private IMassGraph MassGraph
o MassZoom 
 private IMassZoom MassZoom
o MassTitle 
 private DragText MassTitle
o MassAbout 
 private DragText MassAbout
o PeptAnnotation 
 private DragText PeptAnnotation
o MassVectors 
 private Vector MassVectors
o MassNames 
 private Vector MassNames
o MassVector 
 private PeptVect MassVector
o MatchLabel 
 private Label MatchLabel
o Peaks 
 String Peaks
o cmdPanel 
 private Panel cmdPanel
o updateThread 
 private Thread updateThread
we need a thread to update graphics, thats how games work, gee this is so cool!

o V_INTERVAL 
 private static final int V_INTERVAL
unless you want to stall the machine, it's useful to sleep once in a while

o dragPosition 
 public Point dragPosition
key and mouse draggable canvas services

o draggableCanvas 
 public static Vector draggableCanvas

Constructors

o BioGraph 
 public BioGraph()
default constructor, well, this does actually nothing, but is is considered as _correct_ to make a void constructor and a copy constructor (too lazy to do that:)

Methods

o getAppletInfo 
 public String getAppletInfo()
Overrides:
getAppletInfo in class Applet
o init 
 public void init()
Applet input can be a series of PeaksX (Peaks1, Peaks2, etc...) of PeptVect readable values (check PeptVect annotations) with PeaksXName for graph annotations

Overrides:
init in class Applet
o zzStatic 
 private void zzStatic()
static painting

o zzOptions 
 private void zzOptions()
adjust options at every loop

o zzDynamic 
 private void zzDynamic()
dynamic painting of each active or passive element, such as vectors and text

o zzBack 
 private void zzBack(Graphics g)
o destroy 
 public void destroy()
Overrides:
destroy in class Applet
o paint 
 public void paint(Graphics g)
since we do double-buffer, this should be empty

Overrides:
paint in class Container
o start 
 public void start()
Overrides:
start in class Applet
o stop 
 public void stop()
Overrides:
stop in class Applet
o run 
 public void run()
o keyDown 
 public boolean keyDown(Event evt,
                        int key)
Overrides:
keyDown in class Component
o mouseDown 
 public boolean mouseDown(Event evt,
                          int x,
                          int y)
Overrides:
mouseDown in class Component
o mouseDrag 
 public boolean mouseDrag(Event evt,
                          int x,
                          int y)
Overrides:
mouseDrag in class Component
o mouseMove 
 public boolean mouseMove(Event evt,
                          int x,
                          int y)
Overrides:
mouseMove in class Component
o mouseUp 
 public boolean mouseUp(Event evt,
                        int x,
                        int y)
Overrides:
mouseUp in class Component
o Reshape 
 public void Reshape()
o printComponents 
 public void printComponents(Graphics g)
unfortunately this does not work under Java 1.0, when run with full Java 1.1 api, printing works just fine in BioGraph

Overrides:
printComponents in class Container
o paintComponents 
 public void paintComponents(Graphics g)
Overrides:
paintComponents in class Container
o print 
 public void print(Graphics g)
Overrides:
print in class Container
o printAll 
 public void printAll(Graphics g)
Overrides:
printAll in class Component
o paintAll 
 public void paintAll(Graphics g)
Overrides:
paintAll in class Component
o update 
 public void update(Graphics g)
Overrides:
update in class Container
o Update 
 private synchronized void Update()
ExPASy Home page Site Map Search ExPASy Contact us Proteomics tools
Hosted by NCSC USMirror sites:Canada China Korea Switzerland Taiwan